View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3149_low_8 (Length: 379)
Name: NF3149_low_8
Description: NF3149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3149_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 30851594 - 30851957
Alignment:
| Q |
1 |
aagagcgacgagtaatcgatgaaagtgctcgtgcaagatggttttcaatgcggaggaagagatttcttgtgaggagaaaaggacatggaaaacatattag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||| |
|
|
| T |
30851594 |
aagagcgacgagtaatcgatgaaagtgctcgtgcaagatggttttcaatgcggaggaagagattttttgtgacgagaaaaggacatgcaaaacatattag |
30851693 |
T |
|
| Q |
101 |
tattctgatgttcaagccggtgagtgaaatgaggaaggaaagacgtgaaaaaagtggtaaaatgtgattgtatcttgagtgtggcacaaaaccaca---- |
196 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30851694 |
tattccgatgttcaagccagtgagtgaaatgaggaaggaaagacgtgaaaaaagtggtaaaatttgattgtatcttgagtgtggcacaaaaccacactta |
30851793 |
T |
|
| Q |
197 |
-ttagtggagtacacaacgcgaagtgccggataacattagatattaatacactccaaattgaaaagggtgcactcatgtgtggtaagacgcacatgaagt |
295 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
30851794 |
tatagtggagt--acaacgcgaagtgccggataacattagatattaatacactccaaattgaaaagggtgtgctcatgtgcggtaagacgcacatgaagt |
30851891 |
T |
|
| Q |
296 |
cttccatgttgcctctagaagctatgattatagattactaaaccgtcatgcattggacagacgatg |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30851892 |
cttccatgttgcctctagaagctatgattatagattactaaaccgtcatgcattggacggacgatg |
30851957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University