View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3150_high_2 (Length: 789)

Name: NF3150_high_2
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3150_high_2
NF3150_high_2
[»] chr7 (6 HSPs)
chr7 (53-554)||(28266019-28266515)
chr7 (684-767)||(28265829-28265912)
chr7 (58-96)||(31020714-31020752)
chr7 (54-96)||(13803666-13803708)
chr7 (53-99)||(18750871-18750917)
chr7 (57-94)||(40826515-40826552)
[»] chr8 (10 HSPs)
chr8 (11-94)||(2517107-2517190)
chr8 (24-86)||(10170375-10170437)
chr8 (43-94)||(34259803-34259854)
chr8 (53-94)||(3066042-3066083)
chr8 (55-88)||(25799154-25799187)
chr8 (53-93)||(1979413-1979453)
chr8 (55-89)||(16824392-16824426)
chr8 (57-91)||(31551857-31551891)
chr8 (43-85)||(43534933-43534975)
chr8 (55-88)||(25488801-25488834)
[»] chr6 (8 HSPs)
chr6 (53-112)||(34625716-34625775)
chr6 (59-99)||(14244051-14244091)
chr6 (53-94)||(34598538-34598579)
chr6 (56-99)||(6294557-6294600)
chr6 (54-96)||(17422274-17422316)
chr6 (53-91)||(32577482-32577520)
chr6 (53-90)||(4945264-4945301)
chr6 (53-94)||(30781416-30781457)
[»] chr1 (7 HSPs)
chr1 (493-554)||(26655707-26655768)
chr1 (46-89)||(26698193-26698236)
chr1 (53-99)||(29230060-29230106)
chr1 (53-87)||(48317604-48317638)
chr1 (53-94)||(1118414-1118455)
chr1 (54-87)||(4769327-4769360)
chr1 (56-93)||(6440870-6440907)
[»] chr4 (9 HSPs)
chr4 (53-94)||(32369930-32369971)
chr4 (42-84)||(18783987-18784029)
chr4 (42-94)||(3458172-3458224)
chr4 (52-96)||(12441788-12441832)
chr4 (52-99)||(26369447-26369494)
chr4 (53-92)||(31277042-31277081)
chr4 (57-111)||(2796529-2796583)
chr4 (53-94)||(843159-843200)
chr4 (53-102)||(12709995-12710044)
[»] chr3 (7 HSPs)
chr3 (53-97)||(49636844-49636888)
chr3 (43-94)||(28576716-28576767)
chr3 (53-99)||(32166201-32166247)
chr3 (53-86)||(18268023-18268056)
chr3 (43-88)||(21768612-21768657)
chr3 (53-94)||(47542535-47542576)
chr3 (47-88)||(55053787-55053828)
[»] chr2 (12 HSPs)
chr2 (48-96)||(11781576-11781624)
chr2 (52-96)||(6736488-6736532)
chr2 (53-93)||(14268751-14268791)
chr2 (53-92)||(13252319-13252358)
chr2 (53-99)||(8765419-8765465)
chr2 (29-95)||(30563408-30563474)
chr2 (53-99)||(42043215-42043261)
chr2 (53-90)||(28341328-28341365)
chr2 (41-93)||(31095144-31095197)
chr2 (53-93)||(34687007-34687048)
chr2 (53-93)||(34709419-34709460)
chr2 (43-88)||(39459790-39459835)
[»] scaffold0147 (1 HSPs)
scaffold0147 (42-94)||(37670-37722)
[»] chr5 (6 HSPs)
chr5 (53-96)||(9878050-9878093)
chr5 (53-84)||(28322251-28322282)
chr5 (53-102)||(18542228-18542278)
chr5 (53-99)||(37854725-37854771)
chr5 (54-99)||(34073570-34073615)
chr5 (42-87)||(39828473-39828518)


Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 53 - 554
Target Start/End: Complemental strand, 28266515 - 28266019
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtcgatgtatctatgtcatgtgtcaaagtcgtgtcaagggtccgtgtatgtgtcatgtcag 152  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  28266515 ttacatccaattaatttattttctcaaattattaccggtgtcgatgtatctatgtcatgtgtcaaagtcgtgtcaagggtccatgtctgtgtcatgtcag 28266416  T
Q  153 tgcttcgtaaaatatgatacgggttaaaagcttcgaggaagctaagcatatctagtagcaacctattatatctctcacacatattaaaagaaaagtgtat 252  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28266415 tgcttcgtaaaatatgatacaggttaaaagcttcgaggcagctaagcatatctagtagcaacctattatatctctcacacatattaaaagaaaagtgtat 28266316  T
Q  253 agtacctgaaactaaaacatgattgaaatggttgaggcaaatcgaatacggacttcaaagaatatgaatccattatcggaatgcggagttaactgcacaa 352  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28266315 agtacctgaaactaaaacatgattgaaatggttgaggcaaatcaaatacggacttcaaagaatatgaatccattatgggaatgcggagttaactgcacaa 28266216  T
Q  353 taacgagttgaaaatagaacatcatttttaaagtacaagatcaataaaattaaagaaaacgcaatcaagcaaataaaatataacattgcatataatcacc 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28266215 taacgagttgaaaatagaacatcatttttaaagtacaagatcaataaaattaaagaaaacacaatcaagcaaataaaatataacattgcatataatcacc 28266116  T
Q  453 aatcaccttacatcacaagtgaattccaattttccatacattacaatagagatacagagtaacacaacaaaatttcaaatttaagcatgataataatctt 552  Q
    ||||     ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28266115 aatc-----acatcgcaagtgaattccaattttccatacattacaatagagatacagagtaacacaacaaaatttcaaatttaagcatgataataatctt 28266021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 684 - 767
Target Start/End: Complemental strand, 28265912 - 28265829
Alignment:
Q  684 ctgaaccgattattccatcaaatatctcaggaaatgacgagtaagctaagaacttcaaaatatctgttatcacttaattcaaca 767  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28265912 ctgaaccgattattccatcaaatatctcaggaaatgacgagtaagctaagaacttcaaaatatctgttatcacttaattcaaca 28265829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 31020714 - 31020752
Alignment:
Q  58 ttcaattaattcattttctcaaattattaccggtgtcga 96  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  31020714 ttcaattaattcattttctcaaattgttaccggtgtcga 31020752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 13803708 - 13803666
Alignment:
Q  54 tacattcaattaattcattttctcaaattattaccggtgtcga 96  Q
    |||| ||||||| |||||||||||||||||||||| |||||||    
T  13803708 tacactcaattatttcattttctcaaattattacctgtgtcga 13803666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 18750917 - 18750871
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtcgatgt 99  Q
    |||||||||||||  ||||||||| |||||||||||| |||||||||    
T  18750917 ttacattcaattatgtcattttcttaaattattaccgttgtcgatgt 18750871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 40826552 - 40826515
Alignment:
Q  57 attcaattaattcattttctcaaattattaccggtgtc 94  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  40826552 attcaattaattcattttctcaaattatcaccagtgtc 40826515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 2e-39; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 2517190 - 2517107
Alignment:
Q  11 caaaggcatgtctggtatctgacaccaacataacacgtgtagttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2517190 caaaggcatgtctggtatctgacaccaacataacacgtgtagttacattcaattaattcattttctcaaattattaccggtgtc 2517107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 10170375 - 10170437
Alignment:
Q  24 ggtatctgacaccaacataacacgtgtagttacattcaattaattcattttctcaaattatta 86  Q
    |||||| |||||||||| ||| | ||||||||||||||||||||| |||||||||||||||||    
T  10170375 ggtatcagacaccaacacaacccatgtagttacattcaattaatttattttctcaaattatta 10170437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 34259803 - 34259854
Alignment:
Q  43 acacgtgtagttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    |||||| |||||| ||||||||| ||||||||||||||||||||||| ||||    
T  34259803 acacgtctagttatattcaattatttcattttctcaaattattaccgatgtc 34259854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 3066083 - 3066042
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  3066083 ttacattcaattaatccattttctcaaattattacctgtgtc 3066042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 25799187 - 25799154
Alignment:
Q  55 acattcaattaattcattttctcaaattattacc 88  Q
    ||||||||||||||||||||||||||||||||||    
T  25799187 acattcaattaattcattttctcaaattattacc 25799154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 1979453 - 1979413
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgt 93  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  1979453 ttacatttaattaattaattttctcaaattattaccggtgt 1979413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 16824426 - 16824392
Alignment:
Q  55 acattcaattaattcattttctcaaattattaccg 89  Q
    |||||||| ||||||||||||||||||||||||||    
T  16824426 acattcaaataattcattttctcaaattattaccg 16824392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 31551857 - 31551891
Alignment:
Q  57 attcaattaattcattttctcaaattattaccggt 91  Q
    |||||||| ||||||||||||||||||||||||||    
T  31551857 attcaatttattcattttctcaaattattaccggt 31551891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 43534975 - 43534933
Alignment:
Q  43 acacgtgtagttacattcaattaattcattttctcaaattatt 85  Q
    |||| ||||||||||||||| || |||||||||||||||||||    
T  43534975 acacatgtagttacattcaaatatttcattttctcaaattatt 43534933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 25488834 - 25488801
Alignment:
Q  55 acattcaattaattcattttctcaaattattacc 88  Q
    ||||||||||||||||||||||||||||| ||||    
T  25488834 acattcaattaattcattttctcaaattaatacc 25488801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 34625775 - 34625716
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtcgatgtatctatgtcatgt 112  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||    
T  34625775 ttacattcaattaattcattttctcaaattattatcggtgtcgatgtatcaatttcatgt 34625716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 14244051 - 14244091
Alignment:
Q  59 tcaattaattcattttctcaaattattaccggtgtcgatgt 99  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  14244051 tcaattaattcattttctcaaattactaccggtgtcgatgt 14244091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 34598579 - 34598538
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    |||||| ||||||||||||||||||||||||||| |||||||    
T  34598579 ttacatccaattaattcattttctcaaattattatcggtgtc 34598538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 6294557 - 6294600
Alignment:
Q  56 cattcaattaattcattttctcaaattattaccggtgtcgatgt 99  Q
    ||||||||||||||||||||||||||||||| | |||| |||||    
T  6294557 cattcaattaattcattttctcaaattattatcagtgttgatgt 6294600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 17422274 - 17422316
Alignment:
Q  54 tacattcaattaattcattttctcaaattattaccggtgtcga 96  Q
    ||||||||||||  ||||||||||||||||||| |||||||||    
T  17422274 tacattcaattatatcattttctcaaattattatcggtgtcga 17422316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 32577482 - 32577520
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggt 91  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  32577482 ttacattcaattaattcattttctcaaatcatcaccggt 32577520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 4945301 - 4945264
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccgg 90  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  4945301 ttacattcaattaattcattttctcaaacaattaccgg 4945264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 30781416 - 30781457
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    ||||||||| |||||||||||| |||||||| ||||||||||    
T  30781416 ttacattcagttaattcattttatcaaattagtaccggtgtc 30781457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 493 - 554
Target Start/End: Original strand, 26655707 - 26655768
Alignment:
Q  493 ttacaatagagatacagagtaacacaacaaaatttcaaatttaagcatgataataatcttga 554  Q
    |||||||||||||||| |||||||||| ||||| |||| |||||||||||||||||||||||    
T  26655707 ttacaatagagatacaaagtaacacaataaaatgtcaactttaagcatgataataatcttga 26655768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 26698193 - 26698236
Alignment:
Q  46 cgtgtagttacattcaattaattcattttctcaaattattaccg 89  Q
    |||||| |||||||||||||||||||||||||| ||||||||||    
T  26698193 cgtgtaattacattcaattaattcattttctcagattattaccg 26698236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 29230106 - 29230060
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtcgatgt 99  Q
    |||||||||||||  ||||||||||||||||||||||||||| ||||    
T  29230106 ttacattcaattatgtcattttctcaaattattaccggtgtcaatgt 29230060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 48317638 - 48317604
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattac 87  Q
    ||||||||||||| |||||||||||||||||||||    
T  48317638 ttacattcaattatttcattttctcaaattattac 48317604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 1118414 - 1118455
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    |||||||||||||||||||||| ||||||||| ||| |||||    
T  1118414 ttacattcaattaattcattttttcaaattatcacccgtgtc 1118455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 4769327 - 4769360
Alignment:
Q  54 tacattcaattaattcattttctcaaattattac 87  Q
    ||||||||||||| ||||||||||||||||||||    
T  4769327 tacattcaattaactcattttctcaaattattac 4769360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 6440870 - 6440907
Alignment:
Q  56 cattcaattaattcattttctcaaattattaccggtgt 93  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  6440870 cattcaataaattcattttctcaaattattaccagtgt 6440907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 32369930 - 32369971
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  32369930 ttacattcaattaattcattttctcaaattattatcggtgtc 32369971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 18784029 - 18783987
Alignment:
Q  42 aacacgtgtagttacattcaattaattcattttctcaaattat 84  Q
    |||||||||| ||||||||||||| ||||||||||||||||||    
T  18784029 aacacgtgtaattacattcaattacttcattttctcaaattat 18783987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 3458172 - 3458224
Alignment:
Q  42 aacacgtgtagttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    ||||||| || ||||||||||||| ||||||||||| | ||||||||||||||    
T  3458172 aacacgtataattacattcaattatttcattttctccatttattaccggtgtc 3458224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 12441788 - 12441832
Alignment:
Q  52 gttacattcaattaattcattttctcaaattattaccggtgtcga 96  Q
    |||| |||||||| ||||||||||||||| |||||||||||||||    
T  12441788 gttagattcaattgattcattttctcaaagtattaccggtgtcga 12441832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 26369447 - 26369494
Alignment:
Q  52 gttacattcaattaattcattttctcaaattattaccggtgtcgatgt 99  Q
    ||||||||||| |||||||||||||||||||| ||||| |||| ||||    
T  26369447 gttacattcaaataattcattttctcaaattactaccgatgtcaatgt 26369494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 31277042 - 31277081
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtg 92  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  31277042 ttacattcaattagttcattttctcaaattattatcggtg 31277081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 2796583 - 2796529
Alignment:
Q  57 attcaattaattcattttctcaaattattaccggtgtcgatgtatctatgtcatg 111  Q
    ||||||||||||||||||||||||||||||  ||||| || || || ||||||||    
T  2796583 attcaattaattcattttctcaaattattaatggtgttgaagtgtcaatgtcatg 2796529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 843159 - 843200
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    |||| ||||| ||||||||||||||||||||||||| |||||    
T  843159 ttacgttcaaataattcattttctcaaattattaccagtgtc 843200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 12710044 - 12709995
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtcgatgtatc 102  Q
    |||| ||||||||||| |||||||||||||||||||| | |||| |||||    
T  12710044 ttacgttcaattaatttattttctcaaattattaccgatatcgacgtatc 12709995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 49636844 - 49636888
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtcgat 97  Q
    |||||||||||||||||||||||||||||||||||| | ||||||    
T  49636844 ttacattcaattaattcattttctcaaattattaccagagtcgat 49636888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 28576767 - 28576716
Alignment:
Q  43 acacgtgtagttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    |||| |||| ||||||||||||   |||||||||||||||||||||||||||    
T  28576767 acacatgtaattacattcaattttgtcattttctcaaattattaccggtgtc 28576716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 32166201 - 32166247
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtcgatgt 99  Q
    |||||||||||||  ||||||||||||||||||||| ||||| ||||    
T  32166201 ttacattcaattatgtcattttctcaaattattaccagtgtcaatgt 32166247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 18268023 - 18268056
Alignment:
Q  53 ttacattcaattaattcattttctcaaattatta 86  Q
    |||| |||||||||||||||||||||||||||||    
T  18268023 ttacgttcaattaattcattttctcaaattatta 18268056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 21768657 - 21768612
Alignment:
Q  43 acacgtgtagttacattcaattaattcattttctcaaattattacc 88  Q
    |||| ||| ||||| ||||| |||||||||||||||||||||||||    
T  21768657 acacatgtggttacgttcaaataattcattttctcaaattattacc 21768612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 47542576 - 47542535
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    |||||||||| || |||||||||||||||||||||| |||||    
T  47542576 ttacattcaaatagttcattttctcaaattattaccagtgtc 47542535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 55053828 - 55053787
Alignment:
Q  47 gtgtagttacattcaattaattcattttctcaaattattacc 88  Q
    |||||||||||||||  ||||||||||||| |||||||||||    
T  55053828 gtgtagttacattcatataattcattttcttaaattattacc 55053787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 11781576 - 11781624
Alignment:
Q  48 tgtagttacattcaattaattcattttctcaaattattaccggtgtcga 96  Q
    ||||||||||||||| || ||||||||||||||||||||| ||||||||    
T  11781576 tgtagttacattcaaatatttcattttctcaaattattactggtgtcga 11781624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 6736532 - 6736488
Alignment:
Q  52 gttacattcaattaattcattttctcaaattattaccggtgtcga 96  Q
    |||||||||||||| | ||| ||||||||||||||||||||||||    
T  6736532 gttacattcaattattccatattctcaaattattaccggtgtcga 6736488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 14268751 - 14268791
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgt 93  Q
    |||| ||||||||| ||||||||||||||||||||||||||    
T  14268751 ttacgttcaattaagtcattttctcaaattattaccggtgt 14268791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 13252319 - 13252358
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtg 92  Q
    |||||||||| ||||||||||||||| |||||||||||||    
T  13252319 ttacattcaactaattcattttctcacattattaccggtg 13252358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 8765419 - 8765465
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtcgatgt 99  Q
    ||||||||||||||||| |||||| ||||||| ||||||||| ||||    
T  8765419 ttacattcaattaattcgttttcttaaattatcaccggtgtcaatgt 8765465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 30563474 - 30563408
Alignment:
Q  29 ctgacaccaacataacacgtgtagttacattcaattaattcattttctcaaattattaccggtgtcg 95  Q
    |||||||| ||| ||||| | |||||||||| |||||  ||||||||||||||||||| | ||||||    
T  30563474 ctgacaccgacacaacacctatagttacattgaattatgtcattttctcaaattattatccgtgtcg 30563408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 42043215 - 42043261
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtcgatgt 99  Q
    |||||||||||||||||||||| | ||||||||| |||||| |||||    
T  42043215 ttacattcaattaattcattttattaaattattatcggtgttgatgt 42043261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 28341365 - 28341328
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccgg 90  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  28341365 ttacatttaattaattcattttctcaaactattaccgg 28341328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 31095197 - 31095144
Alignment:
Q  41 taacacgtgtagttacattcaattaattc-attttctcaaattattaccggtgt 93  Q
    |||||| |||||||| ||||||||| ||| ||||||||||||||||||| ||||    
T  31095197 taacacatgtagttatattcaattacttccattttctcaaattattaccagtgt 31095144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 34687048 - 34687007
Alignment:
Q  53 ttacattcaattaat-tcattttctcaaattattaccggtgt 93  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  34687048 ttactttcaattaatatcattttctcaaattattaccggtgt 34687007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 34709460 - 34709419
Alignment:
Q  53 ttacattcaattaat-tcattttctcaaattattaccggtgt 93  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  34709460 ttactttcaattaatatcattttctcaaattattaccggtgt 34709419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 39459835 - 39459790
Alignment:
Q  43 acacgtgtagttacattcaattaattcattttctcaaattattacc 88  Q
    ||||||||  ||||||||||||||||||||| || |||||||||||    
T  39459835 acacgtgtgattacattcaattaattcatttccttaaattattacc 39459790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 37670 - 37722
Alignment:
Q  42 aacacgtgtagttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    ||||||| || ||||||||||||| ||||||||||| | ||||||||||||||    
T  37670 aacacgtataattacattcaattatttcattttctccatttattaccggtgtc 37722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 9878050 - 9878093
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtcga 96  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||    
T  9878050 ttacattcaattaattcatattctcaaattattattggtgtcga 9878093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 84
Target Start/End: Complemental strand, 28322282 - 28322251
Alignment:
Q  53 ttacattcaattaattcattttctcaaattat 84  Q
    ||||||||||||||||||||||||||||||||    
T  28322282 ttacattcaattaattcattttctcaaattat 28322251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 18542228 - 18542278
Alignment:
Q  53 ttacattcaattaattc-attttctcaaattattaccggtgtcgatgtatc 102  Q
    ||||||||||||| ||  |||||||||||||||||| ||||||||||||||    
T  18542228 ttacattcaattacttgtattttctcaaattattactggtgtcgatgtatc 18542278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 37854771 - 37854725
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtcgatgt 99  Q
    ||||||| ||| |||||||||||||||| |||||| |||||||||||    
T  37854771 ttacattgaataaattcattttctcaaactattacaggtgtcgatgt 37854725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 34073570 - 34073615
Alignment:
Q  54 tacattcaattaattcattttctcaaattattaccggtgtcgatgt 99  Q
    ||||||| ||||||||||||| |||||||| || ||||||||||||    
T  34073570 tacattcgattaattcattttgtcaaattaatatcggtgtcgatgt 34073615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 39828518 - 39828473
Alignment:
Q  42 aacacgtgtagttacattcaattaattcattttctcaaattattac 87  Q
    ||||| ||| |||||||||||||| ||||| |||||||||||||||    
T  39828518 aacacatgtggttacattcaattatttcatattctcaaattattac 39828473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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