View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3150_high_23 (Length: 253)
Name: NF3150_high_23
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_high_23 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 40736957 - 40736721
Alignment:
| Q |
17 |
attaatgaaggttgatttataaacaaaacnnnnnnnnncatatgattcggctatatgatggagagaccctcgagtttaatgctttgtgtgctcaaattga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40736957 |
attaatgaaggttgatttataaacaaaacaaaaaaaaacatatgattcggctatatgatggagagaccctcgagtttaatgctttgtgtgctcaaattga |
40736858 |
T |
|
| Q |
117 |
gtttctgattcatagaaacatatgaaaacggacatctgcaattcaattcattgaatttctctatccataaagttggggacattctttaccagtttgacat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40736857 |
gtttctgattcatagaaacatatgaaaacggacatctgcaattcaattcattgaatttctctatccataaagttggggacattctttaccagtttgacat |
40736758 |
T |
|
| Q |
217 |
acaaataagataggatcatctaatttgaattgaatgc |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40736757 |
acaaataagataggatcatctaatttgaattgaatgc |
40736721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University