View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3150_high_33 (Length: 230)
Name: NF3150_high_33
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_high_33 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 17539224 - 17539021
Alignment:
| Q |
18 |
aaatcatgcagacattctgtttcaatcatccacgtgatatacatgtgttgcattgtcagcaaaaatggaatttataacacaataaaaacagcaaaatcac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17539224 |
aaatcatgcagacattctgtttcaatcatccacgtgatatacatgtgttgcattgtcagcaaaaatggaatttataacacaataaaaacagcaaaatcac |
17539125 |
T |
|
| Q |
118 |
gtttattattatacaacatattttcttgttggaaaataatatttgtacagttattttgtgacagtttttggatagtcatatttttatcgtgtttcttctc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17539124 |
gtttattattatacaacatattttcttgttggaaaataatatttgtacagttattttgtgacagtttttggatagtcatatttttatcgtgtttcttatc |
17539025 |
T |
|
| Q |
218 |
tctc |
221 |
Q |
| |
|
|||| |
|
|
| T |
17539024 |
tctc |
17539021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 15240191 - 15240393
Alignment:
| Q |
18 |
aaatcatgcagacattctgtttcaatcatccacgtgatatacatgtgttgcattgtcagcaaaaatggaatttataacacaataaaaacagcaaaatcac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15240191 |
aaatcatgcagacattctgtttcaatcatccacgtgatatacatgtgttgcattgtcagcaaaaatggaatttataacacaataaaaacagcaaaatcac |
15240290 |
T |
|
| Q |
118 |
gtttattattatacaacatattttcttgttggaaaataatatttgtacagttattttgtgacagtttttggatagtcatatttttatcgtgtttcttctc |
217 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
15240291 |
gtttattattatacaacatatttttttgttggaaaataatatttgtacagttattttgtgacagtttttggatagtcatatttttattgtgtttcttatc |
15240390 |
T |
|
| Q |
218 |
tct |
220 |
Q |
| |
|
||| |
|
|
| T |
15240391 |
tct |
15240393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 14793201 - 14793403
Alignment:
| Q |
18 |
aaatcatgcagacattctgtttcaatcatccacgtgatatacatgtgttgcattgtcagcaaaaatggaatttataacacaataaaaacagcaaaatcac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14793201 |
aaatcatgcagacattctgtttcaatcatccacgtgatatacatgtgttgcattgtcagcaaaaatggaatttataacacaataaaaacagcaaaatcac |
14793300 |
T |
|
| Q |
118 |
gtttattattatacaacatattttcttgttggaaaataatatttgtacagttattttgtgacagtttttggatagtcatatttttatcgtgtttcttctc |
217 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
14793301 |
gtttattataatacaacatatttttttgttggaaaataatatttgtacagctattttgtgacagtttttggatagtcatatttttatagtgtttcttatc |
14793400 |
T |
|
| Q |
218 |
tct |
220 |
Q |
| |
|
||| |
|
|
| T |
14793401 |
tct |
14793403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University