View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3150_high_34 (Length: 229)
Name: NF3150_high_34
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_high_34 |
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Alignment Details
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 3937487 - 3937328
Alignment:
| Q |
20 |
gagctagtacacatcccagatgcaaggaatagagttgattcagcaccctccaatgcactgattttagatt------------nnnnnnnnntaacatgaa |
107 |
Q |
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| T |
3937487 |
gagctagtacacatcccagatgcaaggaatagagttgattcagcaccctccaatgcactgattttagattaaaaaaaaaaaaaaagatttgtaacatgaa |
3937388 |
T |
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| Q |
108 |
tatatttataatatataaaatcaccttggtgaaaatataatccaattataaatttgtgcta |
168 |
Q |
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| T |
3937387 |
tatatttataatatataaaatcacattggtgaaaatataat-caattataaatttgtgcta |
3937328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 213
Target Start/End: Complemental strand, 3937309 - 3937280
Alignment:
| Q |
184 |
ggaaaatcatatttgggctaacctatttac |
213 |
Q |
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| T |
3937309 |
ggaaaatcatatttgggctaacctatttac |
3937280 |
T |
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