View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3150_high_36 (Length: 218)

Name: NF3150_high_36
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3150_high_36
NF3150_high_36
[»] chr2 (7 HSPs)
chr2 (1-176)||(15751030-15751206)
chr2 (173-218)||(26769462-26769507)
chr2 (172-218)||(18276465-18276511)
chr2 (173-218)||(28412295-28412340)
chr2 (173-208)||(21374773-21374808)
chr2 (173-218)||(18631468-18631513)
chr2 (173-206)||(27447082-27447115)
[»] chr7 (10 HSPs)
chr7 (173-218)||(9778453-9778498)
chr7 (173-218)||(26329451-26329496)
chr7 (173-218)||(35861903-35861948)
chr7 (174-212)||(1885519-1885557)
chr7 (173-211)||(17851376-17851414)
chr7 (174-212)||(21141057-21141095)
chr7 (173-218)||(21826218-21826263)
chr7 (173-217)||(1433399-1433443)
chr7 (174-218)||(11061145-11061189)
chr7 (173-213)||(30730982-30731022)
[»] chr4 (10 HSPs)
chr4 (173-218)||(4157103-4157148)
chr4 (173-218)||(37203223-37203268)
chr4 (173-218)||(12708091-12708136)
chr4 (173-217)||(23293056-23293100)
chr4 (173-209)||(53957367-53957403)
chr4 (175-218)||(847898-847941)
chr4 (173-218)||(19482613-19482658)
chr4 (173-218)||(20633430-20633475)
chr4 (173-218)||(28470342-28470387)
chr4 (168-212)||(24343447-24343491)
[»] chr3 (17 HSPs)
chr3 (173-218)||(750688-750733)
chr3 (173-218)||(14027960-14028005)
chr3 (173-218)||(16000085-16000130)
chr3 (173-218)||(10318109-10318154)
chr3 (173-218)||(10335355-10335400)
chr3 (173-218)||(14747512-14747557)
chr3 (173-218)||(21479069-21479114)
chr3 (173-217)||(3164095-3164139)
chr3 (173-217)||(15796364-15796408)
chr3 (171-207)||(17568750-17568786)
chr3 (173-212)||(7171447-7171486)
chr3 (185-215)||(23915916-23915946)
chr3 (173-211)||(35994813-35994851)
chr3 (173-218)||(3610578-3610623)
chr3 (173-218)||(11665889-11665934)
chr3 (173-218)||(24205110-24205155)
chr3 (173-218)||(34307849-34307894)
[»] chr1 (12 HSPs)
chr1 (173-218)||(10577804-10577849)
chr1 (173-218)||(398834-398879)
chr1 (173-209)||(38078734-38078770)
chr1 (173-212)||(25934573-25934612)
chr1 (173-211)||(31694786-31694824)
chr1 (173-207)||(48548042-48548076)
chr1 (173-218)||(3490453-3490498)
chr1 (173-218)||(22881679-22881724)
chr1 (175-212)||(40456031-40456068)
chr1 (173-218)||(41877539-41877584)
chr1 (173-217)||(6612241-6612285)
chr1 (173-217)||(7918281-7918325)
[»] chr6 (15 HSPs)
chr6 (174-218)||(24353122-24353166)
chr6 (173-211)||(7938061-7938099)
chr6 (173-211)||(18367782-18367820)
chr6 (173-218)||(8777042-8777087)
chr6 (173-218)||(9107439-9107484)
chr6 (173-212)||(10294052-10294091)
chr6 (172-211)||(16766641-16766680)
chr6 (173-211)||(8713930-8713968)
chr6 (173-218)||(5970171-5970216)
chr6 (173-218)||(7377930-7377975)
chr6 (173-218)||(9027123-9027168)
chr6 (173-218)||(12868738-12868783)
chr6 (176-212)||(4118408-4118444)
chr6 (178-218)||(31673555-31673595)
chr6 (173-209)||(34225879-34225915)
[»] chr5 (13 HSPs)
chr5 (173-217)||(15382422-15382466)
chr5 (173-217)||(34276802-34276846)
chr5 (177-218)||(13287468-13287509)
chr5 (173-218)||(21522695-21522740)
chr5 (173-218)||(21533261-21533306)
chr5 (173-218)||(23016060-23016105)
chr5 (177-217)||(20683330-20683370)
chr5 (174-218)||(41995417-41995461)
chr5 (173-212)||(19453133-19453172)
chr5 (173-218)||(6401443-6401488)
chr5 (181-218)||(21191125-21191162)
chr5 (185-217)||(21541987-21542019)
chr5 (172-212)||(28862261-28862301)
[»] scaffold0116 (1 HSPs)
scaffold0116 (173-211)||(9843-9881)
[»] scaffold0053 (1 HSPs)
scaffold0053 (173-218)||(8743-8788)
[»] chr8 (13 HSPs)
chr8 (173-218)||(926857-926902)
chr8 (173-218)||(16642035-16642080)
chr8 (173-218)||(24413629-24413674)
chr8 (173-218)||(43737882-43737927)
chr8 (173-212)||(20785534-20785573)
chr8 (168-218)||(29510373-29510423)
chr8 (173-218)||(3951598-3951643)
chr8 (173-218)||(4673494-4673538)
chr8 (173-218)||(22197811-22197856)
chr8 (173-218)||(22651921-22651966)
chr8 (173-218)||(24362271-24362316)
chr8 (173-218)||(29447414-29447459)
chr8 (173-217)||(24857954-24857998)
[»] scaffold0027 (1 HSPs)
scaffold0027 (173-217)||(46627-46671)
[»] scaffold0021 (1 HSPs)
scaffold0021 (173-217)||(130427-130471)
[»] scaffold0652 (1 HSPs)
scaffold0652 (174-218)||(531-575)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 15751206 - 15751030
Alignment:
Q  1 aaaaatgaaagtgcaagtaacaagccacatgccattgtaagtatgtctggacatttcttttcattattggtctctccttgtggtctaaaactagcttcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15751206 aaaaatgaaagtgcaagtaacaagccacatgccattgtaagtatgtctggacatttcttttcattattggtctctccttgtggtctaaaactagcttcaa 15751107  T
Q  101 gccttgctgtattcagtgcatcaactgaaacaatcacgtaaat-acgattagagcgattaatcatatgttacatatg 176  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  15751106 gccttgctgtattcagtgcatcagctgaaacaatcacgtaaataacgattacagcgattaatcatatgttacatatg 15751030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 26769462 - 26769507
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  26769462 tatgaagcacggatacggacacggacaccggacacgacacagacac 26769507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 18276465 - 18276511
Alignment:
Q  172 atatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    |||||||||||| |||| |||||||||||||||||||| ||||||||    
T  18276465 atatgaagcacggatacagacacggacaccggacacgatacagacac 18276511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 28412295 - 28412340
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||||||| ||||||||||||| |||||||||| |||||    
T  28412295 tatgaagcacgaatatggacacggacaccagacacgacacggacac 28412340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 21374808 - 21374773
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacg 208  Q
    ||||||||||| ||||||||||||||||||||||||    
T  21374808 tatgaagcacggatacggacacggacaccggacacg 21374773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 18631513 - 18631468
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||  ||||| |||||||||||||||||||||| |||||    
T  18631513 tatgaagcacagatacgaacacggacaccggacacgacacggacac 18631468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 27447115 - 27447082
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggaca 206  Q
    ||||||||||| ||||||||||||||||||||||    
T  27447115 tatgaagcacggatacggacacggacaccggaca 27447082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 9778453 - 9778498
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||    
T  9778453 tatgaagcacggatacggacacggacaccggacacgacacggacac 9778498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 26329496 - 26329451
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||    
T  26329496 tatgaagcacgaatacagacacggacactggacacgacacagacac 26329451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 35861903 - 35861948
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||    
T  35861903 tatgaagcacggatacggacgcggacaccggacacgacacagacac 35861948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 1885519 - 1885557
Alignment:
Q  174 atgaagcacgaatacggacacggacaccggacacgacac 212  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  1885519 atgaagcacggatacagacacggacaccggacacgacac 1885557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 17851376 - 17851414
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgaca 211  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  17851376 tatgaagcacggatacagacacggacaccggacacgaca 17851414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 21141095 - 21141057
Alignment:
Q  174 atgaagcacgaatacggacacggacaccggacacgacac 212  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  21141095 atgaagcacggatacggacacggacaccgtacacgacac 21141057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 21826218 - 21826263
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||||| ||||||| ||||||| ||||||||| ||||||    
T  21826218 tatgaagcacgaagacggacatggacaccagacacgacatagacac 21826263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 1433399 - 1433443
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagaca 217  Q
    ||||||||||| |||||| ||||||||||| ||||||||| ||||    
T  1433399 tatgaagcacggatacgggcacggacaccgaacacgacacggaca 1433443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 11061189 - 11061145
Alignment:
Q  174 atgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    |||||||||| ||||||||||||||| |||| ||||||| |||||    
T  11061189 atgaagcacggatacggacacggacatcggatacgacacggacac 11061145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 30730982 - 30731022
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacaca 213  Q
    ||||||||||  ||||||||||||||||| |||||||||||    
T  30730982 tatgaagcacagatacggacacggacaccagacacgacaca 30731022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 4157103 - 4157148
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||    
T  4157103 tatgaagcacggatacggacacggacaccagacacgacacagacac 4157148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 37203223 - 37203268
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||    
T  37203223 tatgaagcacggatatggacacggacaccggacacgacacagacac 37203268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 12708091 - 12708136
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||||||||||||||||||| | |||||||| |||||||    
T  12708091 tatgaagcacgaatacggacacggacatcagacacgacgcagacac 12708136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 23293100 - 23293056
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagaca 217  Q
    ||||||||||  |||||||||||||||||||||||||||| ||||    
T  23293100 tatgaagcacagatacggacacggacaccggacacgacacggaca 23293056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 53957403 - 53957367
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacga 209  Q
    |||||||||||||||||||||| ||||||||||||||    
T  53957403 tatgaagcacgaatacggacacagacaccggacacga 53957367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 847898 - 847941
Alignment:
Q  175 tgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||    
T  847898 tgaagcacggatacggacatggaccccggacacgacacagacac 847941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 19482613 - 19482658
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| ||||| |||| |||||| ||||||||||||||||    
T  19482613 tatgaagcacggatacgaacacagacaccagacacgacacagacac 19482658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 20633430 - 20633475
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| ||||||||||||||||| ||||||| || |||||    
T  20633430 tatgaagcacggatacggacacggacaccagacacgatacggacac 20633475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 28470342 - 28470387
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| ||||||| |||||||||||| | |||||||||||    
T  28470342 tatgaagcacggatacggatacggacaccggatatgacacagacac 28470387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 24343447 - 24343491
Alignment:
Q  168 ttacatatgaagcacgaatacggacacggacaccggacacgacac 212  Q
    |||| ||||||||||| | || |||||||||||||||||||||||    
T  24343447 ttacctatgaagcacggacacagacacggacaccggacacgacac 24343491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 750733 - 750688
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||    
T  750733 tatgaagcacggatacggacacggacaccggacacgacacggacac 750688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 14027960 - 14028005
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||    
T  14027960 tatgaagcacggatacggacacggacaccggacacgacacggacac 14028005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 16000130 - 16000085
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||    
T  16000130 tatgaagcacggatacggacacggacaccgaacacgacacagacac 16000085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 10318154 - 10318109
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| ||||| |||||||||||||||||||||| |||||    
T  10318154 tatgaagcacggatacgaacacggacaccggacacgacacggacac 10318109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 10335400 - 10335355
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| ||||| |||||||||||||||||||||| |||||    
T  10335400 tatgaagcacggatacgaacacggacaccggacacgacacggacac 10335355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 14747512 - 14747557
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| ||||||| |||||||||||||||||||| |||||    
T  14747512 tatgaagcacggatacggatacggacaccggacacgacactgacac 14747557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 21479069 - 21479114
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||| | |||||||||||||||||||||||||||| |||||    
T  21479069 tatgaagcatggatacggacacggacaccggacacgacactgacac 21479114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 3164139 - 3164095
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagaca 217  Q
    ||||||||||| |||| ||||||||||||||||||||||| ||||    
T  3164139 tatgaagcacggatacagacacggacaccggacacgacacggaca 3164095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 15796408 - 15796364
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagaca 217  Q
    ||||||||||| ||| |||||||||||||||||||||||| ||||    
T  15796408 tatgaagcacggatatggacacggacaccggacacgacacggaca 15796364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 17568786 - 17568750
Alignment:
Q  171 catatgaagcacgaatacggacacggacaccggacac 207  Q
    ||||||||||||| |||||||||||||||||||||||    
T  17568786 catatgaagcacggatacggacacggacaccggacac 17568750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 7171447 - 7171486
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacac 212  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  7171447 tatgaagcacggatacggacacagacaccggacacgacac 7171486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 215
Target Start/End: Original strand, 23915916 - 23915946
Alignment:
Q  185 atacggacacggacaccggacacgacacaga 215  Q
    |||||||||||||||||||||||||||||||    
T  23915916 atacggacacggacaccggacacgacacaga 23915946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 35994851 - 35994813
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgaca 211  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  35994851 tatgaagcacggatacggacatggacaccggacacgaca 35994813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 3610578 - 3610623
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||||||||   |||| ||||||||||||||||||||||    
T  3610578 tatgaagcacgaatacatccacgaacaccggacacgacacagacac 3610623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 11665889 - 11665934
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||||||| ||| || |||||||||||||||||| ||||    
T  11665889 tatgaagcacgaatatggatacagacaccggacacgacacacacac 11665934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 24205155 - 24205110
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| | || ||||||||||||||||||||||| |||||    
T  24205155 tatgaagcacggacacagacacggacaccggacacgacacggacac 24205110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 34307894 - 34307849
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||| | ||||||||||| |||||||||| |||||||||||    
T  34307894 tatgaagcatggatacggacacgaacaccggacatgacacagacac 34307849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 10577849 - 10577804
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||    
T  10577849 tatgaagcacggatacggacacggacaccggacacgacacggacac 10577804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 398879 - 398834
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| |||||||| ||||||||||||||||||| |||||    
T  398879 tatgaagcacggatacggacgcggacaccggacacgacacggacac 398834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 38078770 - 38078734
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacga 209  Q
    ||||||||||| |||||||||||||||||||||||||    
T  38078770 tatgaagcacggatacggacacggacaccggacacga 38078734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 25934573 - 25934612
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacac 212  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  25934573 tatgaagcacggatacggacacggacaccggacatgacac 25934612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 31694824 - 31694786
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgaca 211  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  31694824 tatgaagcacggatacggatacggacaccggacacgaca 31694786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 48548076 - 48548042
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacac 207  Q
    ||||||||||| |||||||||||||||||||||||    
T  48548076 tatgaagcacggatacggacacggacaccggacac 48548042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 3490498 - 3490453
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| ||||||| || ||||||||||||||||| |||||    
T  3490498 tatgaagcacggatacggatacagacaccggacacgacactgacac 3490453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 22881724 - 22881679
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| |||  ||||||||||||||||||||||| |||||    
T  22881724 tatgaagcacggatatagacacggacaccggacacgacactgacac 22881679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 40456068 - 40456031
Alignment:
Q  175 tgaagcacgaatacggacacggacaccggacacgacac 212  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  40456068 tgaagcatggatacggacacggacaccggacacgacac 40456031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 41877584 - 41877539
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| ||||||||| ||| ||| ||||||||||||||||    
T  41877584 tatgaagcacggatacggacatggataccagacacgacacagacac 41877539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 6612285 - 6612241
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagaca 217  Q
    ||||||||||  ||||||||||| |||||||||||||||| ||||    
T  6612285 tatgaagcacagatacggacacgaacaccggacacgacacggaca 6612241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 7918325 - 7918281
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagaca 217  Q
    |||||||||||  ||| |||| |||||||||||||||||||||||    
T  7918325 tatgaagcacggttacagacatggacaccggacacgacacagaca 7918281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 24353122 - 24353166
Alignment:
Q  174 atgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||    
T  24353122 atgaagcacgaatacggacacggacaccagacacgacacaaacac 24353166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 7938061 - 7938099
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgaca 211  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  7938061 tatgaagcacggatacggacacggacaccggacacgaca 7938099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 18367782 - 18367820
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgaca 211  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  18367782 tatgaagcacggatacggacacggacaccggacacgaca 18367820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 8777087 - 8777042
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| ||||||||||||||| |||||||||||| |||||    
T  8777087 tatgaagcacggatacggacacggacaacggacacgacacggacac 8777042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 9107484 - 9107439
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||||    
T  9107484 tatgaagcacggatactgacacggacaccggacacgacacggacac 9107439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 10294052 - 10294091
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacac 212  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  10294052 tatgaagcacggatacggacacgaacaccggacacgacac 10294091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 16766641 - 16766680
Alignment:
Q  172 atatgaagcacgaatacggacacggacaccggacacgaca 211  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  16766641 atatgaagcatggatacggacacggacaccggacacgaca 16766680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 8713930 - 8713968
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgaca 211  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  8713930 tatgaagcacaaatacggacacggacaccggacatgaca 8713968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 5970216 - 5970171
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||  |||||||||||||||||||||| ||||| |||||    
T  5970216 tatgaagcacagatacggacacggacaccggacatgacacggacac 5970171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 7377930 - 7377975
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| |||||||| | |||||||||||| ||||||||||    
T  7377930 tatgaagcacggatacggacccagacaccggacacaacacagacac 7377975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 9027123 - 9027168
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||  |||||||||||||| ||||||||||||| |||||    
T  9027123 tatgaagcaccgatacggacacggactccggacacgacacggacac 9027168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 12868783 - 12868738
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||| | |||||||| ||||||||||||||||||| |||||    
T  12868783 tatgaagcagggatacggactcggacaccggacacgacactgacac 12868738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 4118444 - 4118408
Alignment:
Q  176 gaagcacgaatacggacacggacaccggacacgacac 212  Q
    |||||||  ||||||||||||||||||||||||||||    
T  4118444 gaagcactgatacggacacggacaccggacacgacac 4118408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 31673595 - 31673555
Alignment:
Q  178 agcacgaatacggacacggacaccggacacgacacagacac 218  Q
    |||||| |||||||||||||||||||||||| ||| |||||    
T  31673595 agcacggatacggacacggacaccggacacggcacggacac 31673555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 34225915 - 34225879
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacga 209  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  34225915 tatgaagcacggatacggacacggacactggacacga 34225879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 15382422 - 15382466
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagaca 217  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||    
T  15382422 tatgaagcacggatacggacacggacaccggacacgacacggaca 15382466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 34276802 - 34276846
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagaca 217  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||    
T  34276802 tatgaagcacggatacggacacggataccggacacgacacagaca 34276846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 13287509 - 13287468
Alignment:
Q  177 aagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  13287509 aagcacggatacggacacggacaccggacacgacacggacac 13287468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 21522695 - 21522740
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| |||||||||||| ||||||||||||||| |||||    
T  21522695 tatgaagcacggatacggacacggtcaccggacacgacacggacac 21522740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 21533261 - 21533306
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| |||||||||||| ||||||||||||||| |||||    
T  21533261 tatgaagcacggatacggacacggtcaccggacacgacacggacac 21533306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 23016105 - 23016060
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| |||||||||||||| ||||||||||||| |||||    
T  23016105 tatgaagcacggatacggacacggactccggacacgacacggacac 23016060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 20683330 - 20683370
Alignment:
Q  177 aagcacgaatacggacacggacaccggacacgacacagaca 217  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  20683330 aagcacggatacggacacggacaccggacacgacacggaca 20683370  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 41995417 - 41995461
Alignment:
Q  174 atgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    |||||||||| |||||||||||||||| ||| |||||||||||||    
T  41995417 atgaagcacggatacggacacggacactggatacgacacagacac 41995461  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 19453172 - 19453133
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacac 212  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  19453172 tatgaagcacgaaaacggacacggacaccggacatgacac 19453133  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 6401443 - 6401488
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| |||| |||||||||||||||| |||||| |||||    
T  6401443 tatgaagcacggatacagacacggacaccggacgcgacacggacac 6401488  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 21191162 - 21191125
Alignment:
Q  181 acgaatacggacacggacaccggacacgacacagacac 218  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  21191162 acgaatacggacactgacaccggacacgacacggacac 21191125  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 21541987 - 21542019
Alignment:
Q  185 atacggacacggacaccggacacgacacagaca 217  Q
    ||||||||||||||||| |||||||||||||||    
T  21541987 atacggacacggacaccagacacgacacagaca 21542019  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 28862261 - 28862301
Alignment:
Q  172 atatgaagcacgaatacggacacggacaccggacacgacac 212  Q
    |||||||||||| ||| ||||||||||| ||||||||||||    
T  28862261 atatgaagcacggatatggacacggacatcggacacgacac 28862301  T

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Target: scaffold0116 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 9843 - 9881
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgaca 211  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  9843 tatgaagcacggatacggacacggacaccggacacgaca 9881  T

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Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 8743 - 8788
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||| | |||||||||||||||||||||||||||| |||||    
T  8743 tatgaagcatggatacggacacggacaccggacacgacacggacac 8788  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 926902 - 926857
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| ||||| |||||||||||||||||||||| |||||    
T  926902 tatgaagcacggatacgaacacggacaccggacacgacacggacac 926857  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 16642080 - 16642035
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| ||||||| |||||| |||||||||||||||||||    
T  16642080 tatgaagcacggatacggatacggacgccggacacgacacagacac 16642035  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 24413674 - 24413629
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| ||||||||||||||||| |||||||||| |||||    
T  24413674 tatgaagcacggatacggacacggacaccagacacgacacggacac 24413629  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 43737927 - 43737882
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||||    
T  43737927 tatgaagcacggatacagacacggacaccggacacgacacggacac 43737882  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 20785573 - 20785534
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacac 212  Q
    ||||||||||| |||||||||||||||||| |||||||||    
T  20785573 tatgaagcacggatacggacacggacaccgtacacgacac 20785534  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 29510423 - 29510373
Alignment:
Q  168 ttacatatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    |||| ||||||||||| |||| |||| |||||||||||||||||| |||||    
T  29510423 ttacctatgaagcacggatactgacatggacaccggacacgacacggacac 29510373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 3951643 - 3951598
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| ||||||||||||||||| || ||||||| |||||    
T  3951643 tatgaagcacggatacggacacggacaccagatacgacacggacac 3951598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 4673538 - 4673494
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    |||||||||||| |||||| ||||||| ||||||||||||||||||    
T  4673538 tatgaagcacga-tacggatacggacatcggacacgacacagacac 4673494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 22197856 - 22197811
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| ||   |||||||||||||||||||||||||||||    
T  22197856 tatgaagcacggatctagacacggacaccggacacgacacagacac 22197811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 22651921 - 22651966
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||| ||| |||||||||| ||||||||||||||||| |||||    
T  22651921 tatgaagtacggatacggacactgacaccggacacgacacggacac 22651966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 24362316 - 24362271
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||  ||||||| |||||||||||| |||||||||||||    
T  24362316 tatgaagcacagatacggatacggacaccggatacgacacagacac 24362271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 29447414 - 29447459
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    ||||||||||| ||| |||||| ||||||||||||| |||||||||    
T  29447414 tatgaagcacggatatggacacagacaccggacacggcacagacac 29447459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 24857954 - 24857998
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagaca 217  Q
    ||||||| ||| ||||||||||| |||||||||||||||| ||||    
T  24857954 tatgaagaacggatacggacacgaacaccggacacgacacggaca 24857998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 46627 - 46671
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagaca 217  Q
    ||||||||||| ||||||||||||||| |||||||||||| ||||    
T  46627 tatgaagcacggatacggacacggacatcggacacgacacggaca 46671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 130427 - 130471
Alignment:
Q  173 tatgaagcacgaatacggacacggacaccggacacgacacagaca 217  Q
    ||||||||| | |||||||||||||||||||||||||||| ||||    
T  130427 tatgaagcatggatacggacacggacaccggacacgacacggaca 130471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 575 - 531
Alignment:
Q  174 atgaagcacgaatacggacacggacaccggacacgacacagacac 218  Q
    |||||||||| |||||||||||||||||| ||||| ||| |||||    
T  575 atgaagcacggatacggacacggacaccgaacacgccacggacac 531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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