View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3150_high_37 (Length: 209)
Name: NF3150_high_37
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_high_37 |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 1182077 - 1182257
Alignment:
| Q |
13 |
cagagaagaagaaaaccattgatgtgaaatgaattttcaaggtaaaaatgaatccagatggcacagtttcaaaacacaaagcaaggctagtggctagagg |
112 |
Q |
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| T |
1182077 |
cagagaagaagaaaaccattgatgtgaaatgaattttcaaggtaaaaatgaatccagatggcacagtttcaaaacacaaagcaaggctagtggctagagg |
1182176 |
T |
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| Q |
113 |
cttcctgcagagatatggtgttgattataatgaagtgtttgcactagtggcaagattagaaaatgggagattggttgttgc |
193 |
Q |
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| T |
1182177 |
cttcctgcagcgatatggtgttgattataatgaagtgtttgcactagtggcaagattagaaaatgggagattggttgttgc |
1182257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 18194053 - 18194189
Alignment:
| Q |
18 |
aagaagaaaaccattgatgtgaaatgaattttcaaggtaaaaatgaatccagatggcacagtttcaaaacacaaagcaaggctagtggctagaggcttcc |
117 |
Q |
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| T |
18194053 |
aagaagaaaaccattgatgttaaatggattttcaaggtgaaattgaatcctgatggttcaatctctaaatacaaagccagattagtggctagaggtttcc |
18194152 |
T |
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| Q |
118 |
tgcagagatatggtgttgattataatgaagtgtttgc |
154 |
Q |
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| T |
18194153 |
tacagagatatggtgttgactataatgaggtatttgc |
18194189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 8169821 - 8169682
Alignment:
| Q |
17 |
gaagaagaaaaccattgatgtgaaatgaattttcaaggtaaaaatgaatccagatggcacagtttcaaaacacaaagcaaggctagtggctagaggcttc |
116 |
Q |
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| T |
8169821 |
gaagaagaaaaacattaatgtgaaatggattttcaaagtcaaattgaatccaaatgacacattttcaaagcacaaagcaagactagtagctagaggcttc |
8169722 |
T |
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| Q |
117 |
ctgcagagatatggtgttgattataatgaagtgtttgcac |
156 |
Q |
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| T |
8169721 |
ctacattaatatgaaattgactataatgaagtctttgcac |
8169682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 32369486 - 32369350
Alignment:
| Q |
18 |
aagaagaaaaccattgatgtgaaatgaattttcaaggtaaaaatgaatccagatggcacagtttcaaaacacaaagcaaggctagtggctagaggcttcc |
117 |
Q |
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| T |
32369486 |
aagaagaaaaccattgatgttaaatggattttcaaagtgaaattgaatcctgatgaatcattttccaaatacaaagccagattggttgccagaggtttct |
32369387 |
T |
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| Q |
118 |
tgcagagatatggtgttgattataatgaagtgtttgc |
154 |
Q |
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| T |
32369386 |
tatagagatatggtgttgactataatgaggtatttgc |
32369350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 4959452 - 4959316
Alignment:
| Q |
18 |
aagaagaaaaccattgatgtgaaatgaattttcaaggtaaaaatgaatccagatggcacagtttcaaaacacaaagcaaggctagtggctagaggcttcc |
117 |
Q |
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| T |
4959452 |
aagaagaaaaccattgatgttaaatggattttcaaggtgaaattgaatcatgatgggtcaatctctaaatacaaagccagattagttgctagaggtttcc |
4959353 |
T |
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| Q |
118 |
tgcagagatatggtgttgattataatgaagtgtttgc |
154 |
Q |
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| T |
4959352 |
tacagagatatggtgtagactataatgaggtatttgc |
4959316 |
T |
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Target: scaffold0105 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 17071 - 17153
Alignment:
| Q |
34 |
atgtgaaatgaattttcaaggtaaaaatgaatccagatggcacagtttcaaaacacaaagcaaggctagtggctagaggcttc |
116 |
Q |
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| T |
17071 |
atgtaaaatggattttcaaagtcaagctgaatacaaatggcacactttcaaagcacaaagcaaggttagtagctaaaggcttc |
17153 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 8190496 - 8190578
Alignment:
| Q |
34 |
atgtgaaatgaattttcaaggtaaaaatgaatccagatggcacagtttcaaaacacaaagcaaggctagtggctagaggcttc |
116 |
Q |
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| T |
8190496 |
atgtaaaatggattttcaaagtcaagctgaatacaaatggcacactttcaaagcacaaagcaaggttagtagctaaaggcttc |
8190578 |
T |
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