View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3150_high_38 (Length: 209)
Name: NF3150_high_38
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_high_38 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 5415599 - 5415417
Alignment:
| Q |
10 |
catcatcaccattaaatattagtctgagggttccacttgctaatgtggatccaaggacctgagctatcatataagctggtaccttcaacaaagttaaaat |
109 |
Q |
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| T |
5415599 |
catcttcaccattaaatattagtctgaggcttccacttgctaatgtggatccaaggacctgagctatcatataagttggtaccttcaacaaagttaaaat |
5415500 |
T |
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| Q |
110 |
gaatgaaaattcaataatataagacaaattgaggcaatgaagttttttagagttagtagttatagtattaccaacttattatc |
192 |
Q |
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| T |
5415499 |
gaatgaaaattcaataatataagacaaattgaggcaatgaagtcttttagagttagtagttatagtattaccaacttattatc |
5415417 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 36268316 - 36268245
Alignment:
| Q |
22 |
taaatattagtctgagggttccacttgctaatgtggatccaaggacctgagctatcatataagctggtacct |
93 |
Q |
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||||||||||||| || ||||||||||| | ||||||||||| ||| |||||| | |||||||||||||| |
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| T |
36268316 |
taaatattagtctaagagttccacttgcaagtgtggatccaaagacttgagctgctacataagctggtacct |
36268245 |
T |
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