View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3150_high_39 (Length: 206)
Name: NF3150_high_39
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_high_39 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 8e-54; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 18555543 - 18555429
Alignment:
| Q |
18 |
cacgttcattcatctggatttcatgaaggtccttgattcccttcacttttgctacttatgtcaccattgtaaccttcccaatttttcaaatatccccaac |
117 |
Q |
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| T |
18555543 |
cacgttcattcatctggatttcatgaaggcccttgattcccttcacttttgctacttatgtcaccactgtaaccttcccaatttttcaaatatccccaac |
18555444 |
T |
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| Q |
118 |
ctattttattatttt |
132 |
Q |
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| T |
18555443 |
ctattttattatttt |
18555429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 18542481 - 18542372
Alignment:
| Q |
22 |
ttcattcatctggatttcatgaaggtccttgattcccttcacttttgctacttatgtcaccattgtaaccttcccaatttttcaaatatccccaacctat |
121 |
Q |
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||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18542481 |
ttcattcatctggatttcatgaaggcccttgatttcgttcacttttgctacttatgtcaccactgtaaccttcccaatttttcaaatatccccaacctat |
18542382 |
T |
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| Q |
122 |
tttattattt |
131 |
Q |
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| T |
18542381 |
tttattattt |
18542372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 18550561 - 18550451
Alignment:
| Q |
22 |
ttcattcatctggatttcatgaaggtccttgattcccttcacttttgctacttatgtcaccattgtaaccttcccaatttttcaaatatccccaacctat |
121 |
Q |
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||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||| || |
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| T |
18550561 |
ttcattcatctggatttcatggaggctcttgattcccttcacttttgctacttatgtcacaattgtaacctccctaatttttcaaatatccccaaccaat |
18550462 |
T |
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| Q |
122 |
tttattatttt |
132 |
Q |
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|||||||||| |
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| T |
18550461 |
attattatttt |
18550451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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