View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3150_high_4 (Length: 614)
Name: NF3150_high_4
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 180; Significance: 7e-97; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 415 - 594
Target Start/End: Original strand, 30631363 - 30631542
Alignment:
| Q |
415 |
ttttgtaaccattttggtgggtccattaaaaatgtgaatatgggccctaatattgaggagactgttggaagtaatgtgattaacactcaagattagtgga |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30631363 |
ttttgtaaccattttggtgggtccattaaaaatgtgaatatgggccctaatattgaggagactgttggaagtaatgtgattaacactcaagattagtgga |
30631462 |
T |
|
| Q |
515 |
agattagctagcataaagcatgtgaccttacttatgttttgattaatggaaatcagaatctaattatgatttaagtaatt |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30631463 |
agattagctagcataaagcatgtgaccttacttatgttttgattaatggaaatcagaatctaattatgatttaagtaatt |
30631542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 179 - 383
Target Start/End: Original strand, 30631126 - 30631331
Alignment:
| Q |
179 |
tgaaatgtttttaaggtaaaaagttaagggtaagaatcatggttgaggtgtcatgtgtttaagattcaacgaggttgttatataacnnnnnnnnn-cagt |
277 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30631126 |
tgaaatctttttaaggtaaaaagttaagggtaagaatcatggttgaggtgtcatgtgtttaagattcaacgaggttgttatataacaaaaaaaaaacagt |
30631225 |
T |
|
| Q |
278 |
gatggttgtaatgagagaacatggagcagtagtagcggtagtggcagaaaaggagctgaatggttgaagcactagtggttaaattggtgaattatatgat |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30631226 |
gatggttgtaatgagagaacatggagcagtagtagcagtagtggcagaaaaggagctgaatggttgaagcactagtggttaaattggtgaattatatgat |
30631325 |
T |
|
| Q |
378 |
gactat |
383 |
Q |
| |
|
|||||| |
|
|
| T |
30631326 |
gactat |
30631331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 30630956 - 30631060
Alignment:
| Q |
9 |
agcagagaaaacaagacactgttcataggataaccagaagaagaagacattgttaaagtttcaaactttttagtgtatatgacaaaccagaacaaagctc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30630956 |
agcagagaaaacaagacactgttcataggataacgagaagaagaagacattgttaaagtttcaaactttttagtgtatatgacaaaccagaacaaagctc |
30631055 |
T |
|
| Q |
109 |
tatat |
113 |
Q |
| |
|
||||| |
|
|
| T |
30631056 |
tatat |
30631060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University