View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3150_high_8 (Length: 541)
Name: NF3150_high_8
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 9524183 - 9524666
Alignment:
| Q |
1 |
caacgttcatatttgcagattgatactacaattgggannnnnnnncaattggacaaagacaacatgaacatataaagaaaacaaaaatttggatcagata |
100 |
Q |
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| T |
9524183 |
caacgttcatatttgcagattgatactacaagtgggattttttt-caattggacaaagacaacatgaacatataaagaaaacaaaaatttggatcagata |
9524281 |
T |
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| Q |
101 |
atataataggacaataaagaagttaataattctgcaggaactgaatttaatgagaatctatgtctatattattttatttattgattgaagacaatatctt |
200 |
Q |
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| T |
9524282 |
a-----taggacaataaagaagttaataattctgcaggaactgaatttaatgagaatctatgtctatattattttatttattgattgaagacaatatctt |
9524376 |
T |
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| Q |
201 |
gagtttgatttgtgctgactcacatgcattaaactaacacatggtatgtgattnnnnnnngggtaaaatttttagtgaaacaattatccaaaactacgtg |
300 |
Q |
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| T |
9524377 |
gagtttgatttgtgctgactcacatgcattaaactaacacatggtatgtgattaaaaaaa-ggtaaaaattttagtgaaaaaattatccaaaactacgtg |
9524475 |
T |
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| Q |
301 |
tatgtaaattaaactaacacatagtactgtgatttaaaataactgcacacatgttgggtctttttcttatgtaataactaataatttaactgcaattaat |
400 |
Q |
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| T |
9524476 |
tatgtaaattaaactaacacatggtactgtgatttaaaataactgcacccatactgggtctttttcttatg-------taataatttaactgcaat---g |
9524565 |
T |
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| Q |
401 |
gtacagtgtaatgt-atgactgtggtagcagcctttgaatttaatttgaaccatatgtataagtggtgcactcagagcaggcactaaggataaattaaaa |
499 |
Q |
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| T |
9524566 |
gtacagtgtaatgtaatgactgtggtagcagcctttgaatttaatttgaaccatatgtataagtggtgcactcagagcaggcactaaggattaattaaaa |
9524665 |
T |
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