View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3150_low_12 (Length: 462)
Name: NF3150_low_12
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 5e-57; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 4150332 - 4150452
Alignment:
| Q |
10 |
tcgaagaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtacttcagtgact |
109 |
Q |
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| T |
4150332 |
tcgaaaaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctattcttgaggtacttcagtgact |
4150431 |
T |
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| Q |
110 |
attggtttaggaaaaacatag |
130 |
Q |
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| T |
4150432 |
attggtttaggaaaaacatag |
4150452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 4166101 - 4166221
Alignment:
| Q |
10 |
tcgaagaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtacttcagtgact |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4166101 |
tcgaaaaatatcccttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctattcttgaggtacttcagtgact |
4166200 |
T |
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| Q |
110 |
attggtttaggaaaaacatag |
130 |
Q |
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| T |
4166201 |
attggtttaggaaaaacatag |
4166221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 202 - 323
Target Start/End: Original strand, 4150524 - 4150645
Alignment:
| Q |
202 |
aaaacatgacttgctttaaattgatcatgattcaccctccctcattgtatagactctttgcttagttcctggtttatggaaggttgatttcccttactta |
301 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4150524 |
aaaacatgacttgccttaaactgatcatgattcaccctccctcgttgcatagactctttgctcagttcctggtttatggaaggttgatttcccttactta |
4150623 |
T |
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| Q |
302 |
caaaacttgaaattgctgaaaa |
323 |
Q |
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| T |
4150624 |
caaaacttgaaattgctgaaaa |
4150645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 202 - 323
Target Start/End: Original strand, 4166293 - 4166414
Alignment:
| Q |
202 |
aaaacatgacttgctttaaattgatcatgattcaccctccctcattgtatagactctttgcttagttcctggtttatggaaggttgatttcccttactta |
301 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4166293 |
aaaacatgacttgccttaaactgatcatgattcaccctccctcgttgcatagactctttgctcagttcctggtttatggaaggttgatttcccttactta |
4166392 |
T |
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| Q |
302 |
caaaacttgaaattgctgaaaa |
323 |
Q |
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| T |
4166393 |
caaaacttgaaattgctgaaaa |
4166414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 314 - 446
Target Start/End: Original strand, 4150693 - 4150825
Alignment:
| Q |
314 |
ttgctgaaaaagtcacccttggcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttaagaacnnnnnnncattctgatttggcct |
413 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
4150693 |
ttgctgcaaaagtcacccttagcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttcagaactttttttcattctgatttggcct |
4150792 |
T |
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| Q |
414 |
ttttgttttatttcccttagtctctcttgttat |
446 |
Q |
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| T |
4150793 |
ttttgttttatttcccttggtctctcttgttat |
4150825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 314 - 446
Target Start/End: Original strand, 4166462 - 4166594
Alignment:
| Q |
314 |
ttgctgaaaaagtcacccttggcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttaagaacnnnnnnncattctgatttggcct |
413 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
4166462 |
ttgctgcaaaagtcacccttagcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttcagaactttttttcattctgatttggcct |
4166561 |
T |
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| Q |
414 |
ttttgttttatttcccttagtctctcttgttat |
446 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
4166562 |
ttttgttttatttcccttggtctctcttgttat |
4166594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 13490242 - 13490165
Alignment:
| Q |
24 |
ttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtactt |
101 |
Q |
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|||||||| |||||||||||||||||||| || ||| ||||||||||| || |||||| |||||||| |||||||| |
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| T |
13490242 |
ttggttctgctcaactggctagttgagcttgctaatattgaatcattgactgtgtcttcaactactcttcaggtactt |
13490165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 777486 - 777419
Alignment:
| Q |
34 |
tcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtactt |
101 |
Q |
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|||| ||||||||||||||| || |||||||||| ||||||| |||||| |||||||||||||||| |
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| T |
777486 |
tcaattggctagttgagcttgctaatatcgaatcactgacagtgtcttcaaatactcttgaggtactt |
777419 |
T |
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