View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3150_low_15 (Length: 386)

Name: NF3150_low_15
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3150_low_15
NF3150_low_15
[»] chr2 (11 HSPs)
chr2 (1-367)||(4142801-4143174)
chr2 (274-367)||(4147175-4147268)
chr2 (47-108)||(21616747-21616808)
chr2 (52-133)||(16069272-16069352)
chr2 (61-107)||(1239687-1239733)
chr2 (47-101)||(19573970-19574024)
chr2 (47-93)||(31456654-31456700)
chr2 (52-131)||(19536415-19536495)
chr2 (52-108)||(21091708-21091764)
chr2 (47-107)||(31808063-31808123)
chr2 (300-364)||(38861939-38862003)
[»] chr7 (15 HSPs)
chr7 (52-133)||(27945001-27945082)
chr7 (54-141)||(21141002-21141089)
chr7 (42-107)||(5235972-5236037)
chr7 (47-107)||(22868028-22868088)
chr7 (52-108)||(32308105-32308161)
chr7 (57-108)||(11722121-11722172)
chr7 (52-139)||(24339596-24339683)
chr7 (56-98)||(7758317-7758359)
chr7 (47-107)||(3554519-3554579)
chr7 (47-107)||(5835233-5835293)
chr7 (47-107)||(6630925-6630985)
chr7 (52-108)||(13770676-13770732)
chr7 (47-107)||(22484011-22484071)
chr7 (52-100)||(28155563-28155611)
chr7 (52-100)||(29787387-29787435)
[»] chr5 (11 HSPs)
chr5 (53-141)||(6770495-6770583)
chr5 (52-108)||(15410466-15410522)
chr5 (52-104)||(34879339-34879391)
chr5 (52-99)||(27932229-27932276)
chr5 (47-133)||(22013374-22013460)
chr5 (52-141)||(21522702-21522791)
chr5 (52-141)||(21533268-21533357)
chr5 (47-107)||(6035469-6035528)
chr5 (52-108)||(6326315-6326371)
chr5 (47-107)||(12927640-12927700)
chr5 (69-133)||(19820429-19820493)
[»] chr3 (12 HSPs)
chr3 (52-141)||(16000034-16000123)
chr3 (53-132)||(4466619-4466698)
chr3 (52-144)||(4990985-4991077)
chr3 (47-101)||(8039848-8039902)
chr3 (47-101)||(8383249-8383303)
chr3 (47-108)||(18426934-18426995)
chr3 (47-102)||(12703998-12704053)
chr3 (52-106)||(9800027-9800081)
chr3 (54-108)||(23870579-23870633)
chr3 (47-108)||(29112293-29112354)
chr3 (52-108)||(2620071-2620127)
chr3 (47-107)||(35222924-35222984)
[»] chr8 (8 HSPs)
chr8 (47-99)||(14634154-14634206)
chr8 (47-107)||(4786351-4786411)
chr8 (47-98)||(7658458-7658509)
chr8 (47-133)||(24362215-24362301)
chr8 (47-108)||(34897070-34897131)
chr8 (47-107)||(13844609-13844669)
chr8 (47-107)||(14134685-14134745)
chr8 (47-107)||(39954292-39954352)
[»] scaffold0306 (1 HSPs)
scaffold0306 (55-133)||(13360-13438)
[»] scaffold0152 (1 HSPs)
scaffold0152 (55-133)||(21889-21967)
[»] chr6 (17 HSPs)
chr6 (47-108)||(9658864-9658925)
chr6 (47-141)||(7938068-7938162)
chr6 (47-128)||(2153900-2153981)
chr6 (47-132)||(3398580-3398664)
chr6 (47-131)||(7996391-7996475)
chr6 (47-131)||(8022326-8022410)
chr6 (47-106)||(26562676-26562735)
chr6 (57-95)||(322517-322555)
chr6 (47-141)||(13851688-13851782)
chr6 (52-138)||(16766652-16766738)
chr6 (47-101)||(19040344-19040398)
chr6 (47-108)||(7265606-7265667)
chr6 (47-92)||(8389485-8389530)
chr6 (52-141)||(8776991-8777080)
chr6 (52-133)||(12696285-12696365)
chr6 (52-117)||(23771555-23771619)
chr6 (52-128)||(34595099-34595175)
[»] chr1 (13 HSPs)
chr1 (52-133)||(10572607-10572688)
chr1 (47-141)||(398778-398872)
chr1 (58-106)||(609482-609530)
chr1 (52-100)||(5376518-5376566)
chr1 (47-107)||(36878447-36878507)
chr1 (53-108)||(2896140-2896195)
chr1 (46-101)||(34298428-34298483)
chr1 (47-133)||(39130780-39130866)
chr1 (52-101)||(9828036-9828085)
chr1 (47-128)||(15641043-15641124)
chr1 (52-104)||(12443478-12443530)
chr1 (47-107)||(13436444-13436504)
chr1 (52-108)||(39953164-39953220)
[»] scaffold0004 (1 HSPs)
scaffold0004 (52-108)||(92792-92848)
[»] scaffold0039 (1 HSPs)
scaffold0039 (47-106)||(84986-85045)
[»] chr4 (6 HSPs)
chr4 (47-125)||(36635292-36635370)
chr4 (42-107)||(21539875-21539940)
chr4 (52-108)||(22234908-22234965)
chr4 (47-128)||(24343472-24343553)
chr4 (52-96)||(17446068-17446112)
chr4 (52-108)||(56488528-56488584)
[»] scaffold0022 (1 HSPs)
scaffold0022 (47-107)||(90829-90889)
[»] scaffold0018 (1 HSPs)
scaffold0018 (52-108)||(192267-192323)


Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 4142801 - 4143174
Alignment:
Q  1 tgttactatgaagcattagccatgcttcacgtccaacatttatatgtatatttacactgaattatat------aattttcttaaattgttagtggtgtcg 94  Q
    ||||||||||||||||||||||||||||||||||  ||   | ||||||||||||||||||||||||      |||||||||||||||||||||||||||    
T  4142801 tgttactatgaagcattagccatgcttcacgtccgtcaccaacatgtatatttacactgaattatataaatataattttcttaaattgttagtggtgtcg 4142900  T
Q  95 gcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtgttttattgattagatctagttatcaaggtagacattaaaataggacatcaatg 194  Q
    ||||||| |||||| |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||| |||||||    
T  4142901 gcgtgtcagtgtccgggtcgtgttcggtgtccgtatccgaatccgtgttttattgactagatctaattatcaatgtagacattaaaataggatatcaatg 4143000  T
Q  195 agtcttatgtttaggaaataaggtccagttttggctgaattttttgctggtttgattaaatttgtctggtgg-ttatcactttgcaggaaaactatgcca 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  4143001 agtcttatgtttaggaaataaggtccagttttggctgaattttttgctggtttgattaaatttgtctggtggtttatctctttgcaggaaaactatgcca 4143100  T
Q  294 gtagaggaaatcttaacaattgaagtgaaaccaggttggaaaaaggggacaaaaatcacattccctgagaaagg 367  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4143101 gtggaggaaatcttaacaattgaagtgaaaccaggttggaaaaaggggacaaaaatcacattccctgagaaagg 4143174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 367
Target Start/End: Original strand, 4147175 - 4147268
Alignment:
Q  274 tttgcaggaaaactatgccagtagaggaaatcttaacaattgaagtgaaaccaggttggaaaaaggggacaaaaatcacattccctgagaaagg 367  Q
    ||||||| |||||| | || || ||||||||  ||||||||||| |  ||||||| ||||||||||| ||||||||||| ||||| ||||||||    
T  4147175 tttgcagcaaaactgtacctgtggaggaaatactaacaattgaaatccaaccaggctggaaaaagggaacaaaaatcactttcccggagaaagg 4147268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 21616808 - 21616747
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 108  Q
    |||| |||||||||||||| | ||||||| ||||| |||| |||||||||||||||||||||    
T  21616808 tataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtccgtgtcc 21616747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 16069272 - 16069352
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccg 133  Q
    |||||||||||||||| ||||| ||||||| |||  |||||||||||||| ||||||  |||||  || |||||||||||||    
T  16069272 ttacactgaattatatgatttttttaaattattaacggtgtcggcgtgtcagtgtccgtgtcat-atctgtgtccgtatccg 16069352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 1239687 - 1239733
Alignment:
Q  61 attatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 107  Q
    ||||||| ||||||||||||| ||| || ||||||||||||||||||    
T  1239687 attatatgattttcttaaattattaatgatgtcggcgtgtccgtgtc 1239733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 19574024 - 19573970
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtc 101  Q
    |||| |||||||||||||| | ||||||||||||| |||  ||||||||||||||    
T  19574024 tataattacactgaattatgttattttcttaaattattatcggtgtcggcgtgtc 19573970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 31456654 - 31456700
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtc 93  Q
    |||| ||||||||||||| |||||||||||||||| |||| ||||||    
T  31456654 tataattacactgaattacataattttcttaaattattagcggtgtc 31456700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 19536415 - 19536495
Alignment:
Q  52 ttacactgaattatataattttctt-aaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatc 131  Q
    |||||||||||||| | ||||| || ||||| ||||| |||||||||||||  |||||  ||| ||| |||||||||||||    
T  19536415 ttacactgaattatgtgatttttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatc 19536495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 21091764 - 21091708
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 108  Q
    |||||||||| ||| | ||||||||||||| |||| |||||||| ||||| ||||||    
T  21091764 ttacactgaagtatgttattttcttaaattattagcggtgtcggtgtgtcagtgtcc 21091708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 31808123 - 31808063
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 107  Q
    |||| |||||||||||||| | ||||| ||||||| |||| |||||||| ||||| |||||    
T  31808123 tataattacactgaattatgtgattttgttaaattattagcggtgtcggtgtgtcagtgtc 31808063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 38861939 - 38862003
Alignment:
Q  300 gaaatcttaacaattgaagtgaaaccaggttggaaaaaggggacaaaaatcacattccctgagaa 364  Q
    |||||||| |||||||| || ||||| || ||||| ||||||||||| ||||| ||||| |||||    
T  38861939 gaaatcttgacaattgatgtcaaacctggatggaagaaggggacaaagatcactttccccgagaa 38862003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 27945082 - 27945001
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccg 133  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||||||||| ||||||  ||| ||| |||||||||||||||    
T  27945082 ttacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccg 27945001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 21141002 - 21141089
Alignment:
Q  54 acactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtg 141  Q
    |||||||||||||| ||||||||||||| |||||||||||| |||||| | ||||  ||| ||| |||||||||| |||| |||||||    
T  21141002 acactgaattatatgattttcttaaattattagtggtgtcgacgtgtcggcgtccgtgtcgtgtacggtgtccgtgtccgtatccgtg 21141089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 5236037 - 5235972
Alignment:
Q  42 atatgtatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 107  Q
    |||| |||| ||||||| |||||||||||||||||||||| |||| ||||||| |||||| |||||    
T  5236037 atatatataattacactaaattatataattttcttaaattattagcggtgtcgacgtgtcagtgtc 5235972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 22868088 - 22868028
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 107  Q
    |||| |||||||||||||| | ||||||| | ||| ||||||||||||||||||| |||||    
T  22868088 tataattacactgaattatgtgattttctcatattattagtggtgtcggcgtgtcagtgtc 22868028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 32308161 - 32308105
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 108  Q
    |||||||||||||| | ||||||| ||||| |||| |||||||||||||| ||||||    
T  32308161 ttacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtcc 32308105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 11722121 - 11722172
Alignment:
Q  57 ctgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 108  Q
    ||||||||| | ||||||| |||||||||| |||||||||||||| ||||||    
T  11722121 ctgaattatgtgattttctcaaattgttagcggtgtcggcgtgtcagtgtcc 11722172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 24339683 - 24339596
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccg 139  Q
    |||||||||||||| | ||||| | ||||| ||||  |||||||||||||  |||||  ||| ||| ||||||||||||||| |||||    
T  24339683 ttacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcaatgtccatgtcgtgtccggtgtccgtatccgtatccg 24339596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 7758359 - 7758317
Alignment:
Q  56 actgaattatataattttcttaaattgttagtggtgtcggcgt 98  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||    
T  7758359 actgaattatataattttctaaaattattagtggtgtcagcgt 7758317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 3554519 - 3554579
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 107  Q
    |||| ||||| | |||||| ||||||||||||||| | | ||||||||||||||| |||||    
T  3554519 tataattacattaaattatgtaattttcttaaattatcattggtgtcggcgtgtctgtgtc 3554579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 5835293 - 5835233
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 107  Q
    |||| |||||||||||||| | ||||||| ||| | |||||||||||||||| || |||||    
T  5835293 tataattacactgaattatgttattttctcaaactattagtggtgtcggcgtatcagtgtc 5835233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 6630925 - 6630985
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 107  Q
    |||| |||||||||||||  | | ||||| ||||| ||||||||||||||||||| |||||    
T  6630925 tataattacactgaattaagtgactttctcaaattattagtggtgtcggcgtgtcagtgtc 6630985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 13770732 - 13770676
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 108  Q
    |||||||||||||| ||||||| ||||||| ||||  |||||||||| || ||||||    
T  13770732 ttacactgaattatgtaatttttttaaattattagctgtgtcggcgtatcagtgtcc 13770676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 22484071 - 22484011
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 107  Q
    |||| ||| ||||||||||  |||||||| ||||| |||| |||||||||||||| |||||    
T  22484071 tataattatactgaattatgcaattttctaaaattattagcggtgtcggcgtgtcagtgtc 22484011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 28155611 - 28155563
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 100  Q
    |||||| ||||||| ||||||||| ||||| |||| |||||||||||||    
T  28155611 ttacaccgaattatgtaattttctcaaattattagcggtgtcggcgtgt 28155563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 29787387 - 29787435
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 100  Q
    |||||||||||||| | ||||||| ||||| |||| |||||||||||||    
T  29787387 ttacactgaattatgtgattttctcaaattattagcggtgtcggcgtgt 29787435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 6770583 - 6770495
Alignment:
Q  53 tacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtg 141  Q
    ||||||||||||| | ||||||||||||| ||||| ||||| | ||||| ||||||  ||||||||||||||||||||||| |||||||    
T  6770583 tacactgaattatgtgattttcttaaattattagttgtgtcagtgtgtcagtgtccgtgtcatgttcggtgtccgtatccgtatccgtg 6770495  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 15410466 - 15410522
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 108  Q
    ||||||||||| |||||||||||||||||| |||| |||||||||||||| ||||||    
T  15410466 ttacactgaatcatataattttcttaaattattagcggtgtcggcgtgtcagtgtcc 15410522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 34879391 - 34879339
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgt 104  Q
    |||||||||||||||| ||||||| ||||| |||| |||| ||||||||||||    
T  34879391 ttacactgaattatatgattttctcaaatttttagcggtgccggcgtgtccgt 34879339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 27932276 - 27932229
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtg 99  Q
    |||||||||||||| ||||||||| ||||| |||| ||||||||||||    
T  27932276 ttacactgaattatgtaattttctcaaattattagcggtgtcggcgtg 27932229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 22013460 - 22013374
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccg 133  Q
    |||| ||||||| |||||| |||||||   ||||| ||||  ||||||||||||| ||||||  ||| ||| |||||||||||||||    
T  22013460 tataattacactaaattatgtaatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccg 22013374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 21522791 - 21522702
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtg 141  Q
    |||||||||||||| | ||||| | ||||| ||||  ||||||||||||| ||||||  ||| ||| ||||| |||| |||| |||||||    
T  21522791 ttacactgaattatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgtccgtatccgtg 21522702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 21533357 - 21533268
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtg 141  Q
    |||||||||||||| | ||||| | ||||| ||||  ||||||||||||| ||||||  ||| ||| ||||| |||| |||| |||||||    
T  21533357 ttacactgaattatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgtccgtatccgtg 21533268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 6035528 - 6035469
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 107  Q
    |||| |||||||||||||||| |||| || ||||| |||| |||||||||||||| |||||    
T  6035528 tataattacactgaattatattattt-ctcaaattattagcggtgtcggcgtgtcagtgtc 6035469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 6326315 - 6326371
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 108  Q
    |||||||||||||| ||||||||| |||||  ||| | |||||||||||| ||||||    
T  6326315 ttacactgaattatgtaattttctcaaattactagcgatgtcggcgtgtcagtgtcc 6326371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 12927700 - 12927640
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 107  Q
    |||| ||||||| |||||||| ||||||| ||||| |||| | |||||| |||||||||||    
T  12927700 tataattacactaaattatatgattttctcaaattattagcgatgtcggtgtgtccgtgtc 12927640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 19820429 - 19820493
Alignment:
Q  69 attttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccg 133  Q
    ||||||| ||||| |||| |||||||| ||||| ||||||  ||| ||| |||||||||||||||    
T  19820429 attttctcaaattattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtgtccgtatccg 19820493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 16000034 - 16000123
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtg 141  Q
    |||||||||||||| | ||||| ||||||| ||||| ||||||||||||| |||||   ||| |||||||||||||| |||| |||||||    
T  16000034 ttacactgaattatgttatttttttaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtgtccgtatccgtg 16000123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 4466619 - 4466698
Alignment:
Q  53 tacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatcc 132  Q
    ||||||||||||||| ||||||||||||| |||  |||||||| ||||| |||| |  ||||||| ||||||||||||||    
T  4466619 tacactgaattatatgattttcttaaattattaccggtgtcggagtgtcagtgttcgtgtcatgtccggtgtccgtatcc 4466698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 4990985 - 4991077
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtgttt 144  Q
    |||||||||||||| ||||||||| ||| | |||| |||||||| ||||| || |||  ||| |||||||||||||| |||| || |||||||    
T  4990985 ttacactgaattatgtaattttctcaaactattagcggtgtcggagtgtcagtctccgtgtcgtgttcggtgtccgtgtccgtatacgtgttt 4991077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 8039848 - 8039902
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtc 101  Q
    |||| |||||||||||||||||||||||| ||||| |||| ||||| ||||||||    
T  8039848 tataattacactgaattatataattttctcaaattattagcggtgttggcgtgtc 8039902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 8383303 - 8383249
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtc 101  Q
    |||| |||||||||||||||| ||||||| ||||| |||| ||||||||||||||    
T  8383303 tataattacactgaattatatgattttctcaaattattagcggtgtcggcgtgtc 8383249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 18426995 - 18426934
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 108  Q
    |||| |||||| ||||||| | ||||| | ||||| ||||||||||||||||||||||||||    
T  18426995 tataattacaccgaattatgtgattttttgaaattattagtggtgtcggcgtgtccgtgtcc 18426934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 12704053 - 12703998
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtcc 102  Q
    |||| |||||||||||||| |  |||||| ||||| ||||||||||||||||||||    
T  12704053 tataattacactgaattatgtgcttttctcaaattattagtggtgtcggcgtgtcc 12703998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 9800081 - 9800027
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgt 106  Q
    |||||| ||||||| ||||||||| ||||| |||| |||||||||||||| ||||    
T  9800081 ttacacggaattatgtaattttctcaaattattagaggtgtcggcgtgtcagtgt 9800027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 23870579 - 23870633
Alignment:
Q  54 acactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 108  Q
    |||||||||||||| ||||| | ||||| |||| ||||||| |||||||||||||    
T  23870579 acactgaattatatgattttttcaaattattagcggtgtcgacgtgtccgtgtcc 23870633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 29112293 - 29112354
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 108  Q
    |||| |||||||||||||||| ||||||| ||||  |||||||||||  |||||| ||||||    
T  29112293 tataattacactgaattatatgattttctcaaataattagtggtgtcaacgtgtcagtgtcc 29112354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 2620071 - 2620127
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 108  Q
    ||||||| |||||| | ||||||| ||||  ||||||||||||||||||| ||||||    
T  2620071 ttacacttaattatgtgattttctcaaatgattagtggtgtcggcgtgtcagtgtcc 2620127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 35222984 - 35222924
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 107  Q
    |||| ||||| |||||||| | ||||||| ||| ||||||| ||||||||||||| |||||    
T  35222984 tataattacattgaattatgtgattttctaaaaatgttagttgtgtcggcgtgtctgtgtc 35222924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 14634154 - 14634206
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtg 99  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  14634154 tataattacactgaattatataattttcttaaattgttagcggtgtcgacgtg 14634206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 4786351 - 4786411
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 107  Q
    |||| |||||||||||||| | ||||||||||||| ||| ||||||||||||||| |||||    
T  4786351 tataattacactgaattatgtgattttcttaaattattaatggtgtcggcgtgtcagtgtc 4786411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 7658509 - 7658458
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgt 98  Q
    |||| |||||||||||||| ||||||||| ||||| ||||||||||||||||    
T  7658509 tataattacactgaattatgtaattttctcaaattattagtggtgtcggcgt 7658458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 24362215 - 24362301
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccg 133  Q
    |||| |||||||||||||| | ||| ||| ||||| |||| |||||||||||||| |||||   ||| | | |||||||||||||||    
T  24362215 tataattacactgaattatgtgattctctcaaattattagcggtgtcggcgtgtcggtgtctgtgtcgtatccggtgtccgtatccg 24362301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 34897131 - 34897070
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 108  Q
    |||| |||||||||||||| | ||||||| ||||| |||| ||||||| |||||| ||||||    
T  34897131 tataattacactgaattatgtgattttctcaaattattagcggtgtcgacgtgtctgtgtcc 34897070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 13844609 - 13844669
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 107  Q
    |||| ||||||| |||||| | ||||||| ||||| ||||  |||||||||||||||||||    
T  13844609 tataattacactcaattatgtgattttctcaaattattagcagtgtcggcgtgtccgtgtc 13844669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 14134745 - 14134685
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 107  Q
    |||| |||||||||||||| | ||||||| ||||| |||||  ||||| ||||||||||||    
T  14134745 tataattacactgaattatgtgattttctcaaattattagtattgtcgacgtgtccgtgtc 14134685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 39954292 - 39954352
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 107  Q
    |||| ||||||| |||||| | ||||||| ||||| |||| |||||||||||||| |||||    
T  39954292 tataattacactaaattatgtgattttctcaaattattagcggtgtcggcgtgtcggtgtc 39954352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 13438 - 13360
Alignment:
Q  55 cactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccg 133  Q
    ||||||||||| | ||||||| ||||| ||||| ||||||||||||| ||||||  ||||| | |||||||||||||||    
T  13438 cactgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccg 13360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 21889 - 21967
Alignment:
Q  55 cactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccg 133  Q
    ||||||||||| | ||||||| ||||| ||||| ||||||||||||| ||||||  ||||| | |||||||||||||||    
T  21889 cactgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccg 21967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 9658925 - 9658864
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 108  Q
    |||| |||||||||||||| | ||||||||||||| |||| |||||||||||||| ||||||    
T  9658925 tataattacactgaattatgtgattttcttaaattattagcggtgtcggcgtgtcagtgtcc 9658864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 7938162 - 7938068
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtg 141  Q
    |||| ||||||| |||||||| ||||| | ||||| ||||  ||||||||||||| ||||||  ||| ||| |||||||||| |||| |||||||    
T  7938162 tataattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgtatccgtg 7938068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 2153900 - 2153981
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgt 128  Q
    |||| ||||||| |||||||| ||||||||||||| ||  | ||||||||||||| ||||||  ||||||| || |||||||    
T  2153900 tataattacactaaattatatcattttcttaaattattgttcgtgtcggcgtgtcggtgtccgtgtcatgtccgatgtccgt 2153981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 3398664 - 3398580
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatcc 132  Q
    |||| |||||||||||||||| ||||| | ||||| ||||  ||||||||||||| ||||||  ||| |||||| |||||||||||    
T  3398664 tataattacactgaattatatgatttt-tcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgttcgatgtccgtatcc 3398580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 7996391 - 7996475
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatc 131  Q
    |||| |||||||||||||||| ||||||| ||||| ||||  |||||||| |||| ||||||  ||||||| | ||||| |||||    
T  7996391 tataattacactgaattatatgattttctcaaattattagcagtgtcggcatgtcagtgtccttgtcatgtactgtgtctgtatc 7996475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 8022410 - 8022326
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatc 131  Q
    |||| |||||||||||||||| ||||||| ||||| ||||  |||||||| |||| ||||||  ||||||| | ||||| |||||    
T  8022410 tataattacactgaattatatgattttctcaaattattagcagtgtcggcatgtcagtgtccttgtcatgtactgtgtctgtatc 8022326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 26562735 - 26562676
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgt 106  Q
    |||| |||||||||||||| | ||||||| ||||| ||||  ||||||||||||||||||    
T  26562735 tataattacactgaattatgtgattttctcaaatttttagcagtgtcggcgtgtccgtgt 26562676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 322555 - 322517
Alignment:
Q  57 ctgaattatataattttcttaaattgttagtggtgtcgg 95  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  322555 ctgaattatgtaattttcttaaattattagtggtgtcgg 322517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 13851782 - 13851688
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtg 141  Q
    |||| |||||||||||||  | ||||||| ||||| |||| ||||||| |||||| ||||||  ||| |||||  ||||||| |||||| |||||    
T  13851782 tataattacactgaattacgttattttctcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgttcaatgtccgtgtccgaacccgtg 13851688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 16766738 - 16766652
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatcc 138  Q
    |||||||||||||| | ||||| | ||||| ||||  ||||||||||||| ||||||  ||| ||| |||||||||| |||| ||||    
T  16766738 ttacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgtatcc 16766652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 19040398 - 19040344
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtc 101  Q
    |||| |||||||||||||| | ||||||| ||||| |||| ||||||||||||||    
T  19040398 tataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtc 19040344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 7265606 - 7265667
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 108  Q
    |||| |||||||||||||| | ||||||| ||||| |||| ||||| |||||||| ||||||    
T  7265606 tataattacactgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtcc 7265667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 8389485 - 8389530
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgt 92  Q
    |||| |||||||||||||||| ||||||||||||| ||||| ||||    
T  8389485 tataattacactgaattatatgattttcttaaattattagtagtgt 8389530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 8776991 - 8777080
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtg 141  Q
    |||||||||||| | | ||||| | ||||| ||||| ||||||||||||| ||||||  ||| ||| || ||||||| |||| |||||||    
T  8776991 ttacactgaattttgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccgttgtccgtgtccgtatccgtg 8777080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 12696365 - 12696285
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccg 133  Q
    |||||||||||||| ||||||| | ||||| ||||  ||||||||||||| ||||||  ||| || || |||||||||||||    
T  12696365 ttacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtg-tccgtgtccgtatccg 12696285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 23771619 - 23771555
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgt 117  Q
    |||||||||| ||||||||||| ||||||| |||   ||||||||||||||||||||  |||||||    
T  23771619 ttacactgaagtatataatttt-ttaaattattaactgtgtcggcgtgtccgtgtccgtgtcatgt 23771555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 34595175 - 34595099
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgt 128  Q
    |||||||||||||| | ||||| | ||||| ||||| |||||||||||||  |||||  ||| ||| ||||||||||    
T  34595175 ttacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 34595099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 10572607 - 10572688
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccg 133  Q
    |||||| ||||||| | ||||||| ||||| ||||||||||||||||||| |||| |  ||| ||| |||||||||||||||    
T  10572607 ttacaccgaattatgtgattttctcaaattattagtggtgtcggcgtgtcagtgttcatgtcgtgtccggtgtccgtatccg 10572688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 398778 - 398872
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtg 141  Q
    |||| |||||||||||||| | ||||| | ||||| |||| |||||||||||||| ||||||  ||| ||| |||||||||  |||| |||||||    
T  398778 tataattacactgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgcgtccgtatccgtg 398872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 609482 - 609530
Alignment:
Q  58 tgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgt 106  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||| ||||    
T  609482 tgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgt 609530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 5376518 - 5376566
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 100  Q
    |||||||||||||| | ||||||||||||| |||| |||||||||||||    
T  5376518 ttacactgaattatgttattttcttaaattattagcggtgtcggcgtgt 5376566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 36878507 - 36878447
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 107  Q
    |||| |||||||||||||| | ||||||| ||||| |||| |||||||||||||| |||||    
T  36878507 tataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 36878447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 2896140 - 2896195
Alignment:
Q  53 tacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 108  Q
    ||||||||||||| | ||||||| ||||| |||| |||||||||||||| ||||||    
T  2896140 tacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtcc 2896195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 34298483 - 34298428
Alignment:
Q  46 gtatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtc 101  Q
    ||||| |||||||||||||| | ||||||| ||||| ||||||||||||| |||||    
T  34298483 gtataattacactgaattatgtgattttctcaaattattagtggtgtcggtgtgtc 34298428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 39130780 - 39130866
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccg 133  Q
    |||| ||||||| |||||||||||||||| ||||| ||| | ||||| |||||||  | |||  ||| ||| |||||||||||||||    
T  39130780 tataattacactaaattatataattttctaaaattattaatagtgtcagcgtgtcaatatccatgtcgtgtccggtgtccgtatccg 39130866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 9828085 - 9828036
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtc 101  Q
    |||||||||||||| | ||||| | ||||| |||||||||||||||||||    
T  9828085 ttacactgaattatgtgattttatcaaattattagtggtgtcggcgtgtc 9828036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 15641043 - 15641124
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgt 128  Q
    |||| ||||||||||| || | ||||||||||||| ||||  |||||||| |||| ||||||  ||||||| || |||||||    
T  15641043 tatagttacactgaatcatgtgattttcttaaattattagcagtgtcggcatgtcagtgtccgtgtcatgtccgatgtccgt 15641124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 12443478 - 12443530
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgt 104  Q
    |||||||||||||| | ||||||| ||||| ||||  ||||||||||||||||    
T  12443478 ttacactgaattatgtgattttctcaaattattagctgtgtcggcgtgtccgt 12443530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 13436504 - 13436444
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 107  Q
    |||| |||||||||||||| | |||| |||||||| ||||  |||||||||||| ||||||    
T  13436504 tataattacactgaattatgtgatttccttaaattattagcagtgtcggcgtgttcgtgtc 13436444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 39953164 - 39953220
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 108  Q
    ||||||| |||||| | ||||||| ||||| |||| ||||||||||| |||||||||    
T  39953164 ttacactaaattatgtgattttctaaaattattagcggtgtcggcgtttccgtgtcc 39953220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 92848 - 92792
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 108  Q
    |||||||||||||| ||||||||| ||||| |||| |||||||||||||| ||||||    
T  92848 ttacactgaattatgtaattttctcaaattattagcggtgtcggcgtgtcagtgtcc 92792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 84986 - 85045
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgt 106  Q
    |||| ||||||  |||||||| |||||||||||||  |||||||||||||||||||||||    
T  84986 tataattacacataattatatgattttcttaaattagtagtggtgtcggcgtgtccgtgt 85045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 36635370 - 36635292
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtc 125  Q
    |||| |||||||||||||| | ||||||| ||||| |||||||||| |||||||| ||||||  ||| ||| |||||||    
T  36635370 tataattacactgaattatgtgattttctcaaattattagtggtgttggcgtgtcagtgtccgagtcgtgtccggtgtc 36635292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 21539875 - 21539940
Alignment:
Q  42 atatgtatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 107  Q
    |||| |||| ||||||| |||||||| ||||||||||||| ||| |||||||||| |||| |||||    
T  21539875 atatatataattacactaaattatatgattttcttaaattattaatggtgtcggcatgtcagtgtc 21539940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 22234908 - 22234965
Alignment:
Q  52 ttacactgaattatataattttctt-aaattgttagtggtgtcggcgtgtccgtgtcc 108  Q
    |||||||||||||| | ||||| || ||||| |||| |||||||||||||||||||||    
T  22234908 ttacactgaattatgtgatttttttcaaatttttagcggtgtcggcgtgtccgtgtcc 22234965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 24343553 - 24343472
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgt 128  Q
    |||| |||||||||||||| ||||||||| ||||| |||   ||||||||||||| | ||||  ||| ||| ||||||||||    
T  24343553 tataattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtgtccggtgtccgt 24343472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 17446112 - 17446068
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggc 96  Q
    ||||||| |||||| | ||||||||||||| ||||||||||||||    
T  17446112 ttacactaaattatgtgattttcttaaattattagtggtgtcggc 17446068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 56488528 - 56488584
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 108  Q
    |||| ||||||||||| ||||||| |||||||||| ||||||  |||||| ||||||    
T  56488528 ttaccctgaattatatgattttctcaaattgttagcggtgtcaacgtgtcggtgtcc 56488584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 90889 - 90829
Alignment:
Q  47 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 107  Q
    |||| |||||||||||||||| ||||||| ||||| ||| |||||| || ||||| |||||    
T  90889 tataattacactgaattatatgattttctcaaattattaatggtgttggtgtgtcagtgtc 90829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 192267 - 192323
Alignment:
Q  52 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 108  Q
    |||||| ||||||| ||||||||| ||||| |||  |||||||||||||| ||||||    
T  192267 ttacaccgaattatgtaattttctcaaattattaacggtgtcggcgtgtcagtgtcc 192323  T

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