View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3150_low_17 (Length: 336)
Name: NF3150_low_17
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_low_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 31726644 - 31726962
Alignment:
| Q |
19 |
ccactttctgttccaaagttggcactgcgtcgcaaggaagttcttgagttcgacatatatcataattccaaacacacactaggaaatcttatccctctaa |
118 |
Q |
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| T |
31726644 |
ccactttttgttccaaagttggcactgtgtcgcaaggaagttcttgagttcgacatatatcataattccaaacacacactaggaaatattatccctctaa |
31726743 |
T |
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| Q |
119 |
acaacaataatcatctcaactcatcatcaccactaagaaatcattatttttctagaag-gnnnnnnnnnnnnnntctccttcaccttctataatgatctc |
217 |
Q |
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| T |
31726744 |
acaacaataatcatctcaactcatcatcaccactaagaaatcattatttttctagaagaaaaaaaatatatatatctccttcaccttctataatgatctc |
31726843 |
T |
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| Q |
218 |
aactatatggaattgggttgtaatcattattatgttaaaaatcatcaagtgtacttccttgtaagagattgaagaccaacaacatttcttcattgccatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31726844 |
aactatatggaattgggttgtaatcattattatgttaaaaatcatcaagtgtacttccttgtaagagattgaagaccaacaacatttcttcattgccatc |
31726943 |
T |
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| Q |
318 |
gtgttaggaaagaaagatc |
336 |
Q |
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| T |
31726944 |
gtgttaggaaagaaagatc |
31726962 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 314
Target Start/End: Original strand, 34522974 - 34523012
Alignment:
| Q |
276 |
ttgtaagagattgaagaccaacaacatttcttcattgcc |
314 |
Q |
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| T |
34522974 |
ttgtaagagattgaagactaataacatttcttcattgcc |
34523012 |
T |
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