View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3150_low_19 (Length: 316)
Name: NF3150_low_19
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 18340212 - 18340488
Alignment:
| Q |
18 |
ttaagcggatcatctaagagagcagaagctagaagacgtcgtgcagcggagatgagtgatggggaagcacgttgggttggtttggaagagatgaaacggt |
117 |
Q |
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| T |
18340212 |
ttaagcggatcatctaagagcgcagaagctagaagacgtctggcagcggagatgagtgatggtgaggcacgttgggttggtttggaagagatgaaacggt |
18340311 |
T |
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| Q |
118 |
tatggaagacaccgcccggggagacgacggaggtggtggggtctgcatggatgtatatattgaagagatggttgtttccggcgaagaattttt-cccata |
216 |
Q |
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| T |
18340312 |
tatggaagacaccgccaggggagacgacggaggtggtggggtctgcatggatgtatatattgaagagatggttgtttccggtgaagaatttttccccata |
18340411 |
T |
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| Q |
217 |
aaggagcaaaggtgaggttggtgttggtgaggaagaggaaagcgattttagg-tttagggtttgtgagggtggataa |
292 |
Q |
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| T |
18340412 |
aaggagcaaaggtgaggttggtgttggtgaggaagaggaaagcgattttaggttttagggtttgtgagggtggataa |
18340488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 27 - 287
Target Start/End: Original strand, 18345379 - 18345639
Alignment:
| Q |
27 |
tcatctaagagagcagaagctagaagacgtcgtgcagcggagatgagtgatggggaagcacgttgggttggtttggaagagatgaaacggttatggaaga |
126 |
Q |
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| T |
18345379 |
tcatctaagagggcagatgctaggagacggcgggcagcagcgatgagtgatggagagtaacgtttggtgggtttggaagggatgaaacggttttggaaga |
18345478 |
T |
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| Q |
127 |
caccgcccggggagacgacggaggtggtggggtctgcatggatgtatatattgaagagatggttgtttccggcgaagaatttttcccataaaggagcaaa |
226 |
Q |
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| T |
18345479 |
caccgccgggggaggcgacataggtggtgggatctgcatggacgtagatgttgaagaggtggttgtttccaacgaagaatttttcccataaaggagcgaa |
18345578 |
T |
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| Q |
227 |
ggtgaggttggtgttggtgaggaagaggaaagcgattttaggtttagggtttgtgagggtg |
287 |
Q |
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| T |
18345579 |
ggtgaggttagagttggtgaggaagaggaaagcgattttgggtttgggttttatgagggtg |
18345639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 156 - 286
Target Start/End: Complemental strand, 18303352 - 18303222
Alignment:
| Q |
156 |
gggtctgcatggatgtatatattgaagagatggttgtttccggcgaagaatttttcccataaaggagcaaaggtgaggttggtgttggtgaggaagagga |
255 |
Q |
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| T |
18303352 |
gggtctgcgtggatgtagatgttgaagaggtggttgtttccagtaaagaatatttcccacaaaggagcaaaggtgaagttggtgtttgtgaggaagagga |
18303253 |
T |
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| Q |
256 |
aagcgattttaggtttagggtttgtgagggt |
286 |
Q |
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| T |
18303252 |
aggcgattttgggtttagggttcttgagggt |
18303222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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