View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3150_low_20 (Length: 299)
Name: NF3150_low_20
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_low_20 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 32154 - 32442
Alignment:
| Q |
1 |
acataaccgtgacacgaacatcaataataatttatgaaaataaaagtggttaaatataatcacatgtgtcagtatcatgctagtgtgggaacactttaat |
100 |
Q |
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| T |
32154 |
acataaccgtgacacaaacatcaataataatttgtgaaaataaaagtggttaaatataatcacatgtgtcaggatcatgccagtgtgggaacaccttaat |
32253 |
T |
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| Q |
101 |
cagacatgtttgcgttacacacatgtgtccggttggcttaatttggcagattatgaactacttttctaaaaaatgtataaattctaactacgatacaaca |
200 |
Q |
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| T |
32254 |
cagacatgtttgtgttacacacacgtgtccggttggcttaatttggcagattatgaactacttttctaaaaaatgtataaattctaactacgatacaaca |
32353 |
T |
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| Q |
201 |
aaatttatgagcatattgaaggattacacttttgaaaagaaactcaaaatagttctgatgttactctcctttttcttcttggatttctt |
289 |
Q |
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| T |
32354 |
aaatttatgagcatattgaaggattacacttttgaaaagaaactcaaaatagttctgatgttactctcctttttcttcttggatttctt |
32442 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 5744234 - 5744290
Alignment:
| Q |
12 |
acacgaacatcaataataatttatgaaaataaaagtggttaaatataatcacatgtg |
68 |
Q |
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| T |
5744234 |
acacaaacatcaacaataacttatgaaaataaaagtaattaaatgtaatcacatgtg |
5744290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 50187301 - 50187341
Alignment:
| Q |
18 |
acatcaataataatttatgaaaataaaagtggttaaatata |
58 |
Q |
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| T |
50187301 |
acatcaataataatttaagaaaataaaagtgattgaatata |
50187341 |
T |
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