View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3150_low_24 (Length: 286)
Name: NF3150_low_24
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 272
Target Start/End: Original strand, 50177378 - 50177638
Alignment:
| Q |
9 |
gacatcatcaaactcgtcttgggtttcagcttcttcatctgccgatgagtcgggtgaacttgcatctagagcatcattgagatatgaaatgaagtcatcg |
108 |
Q |
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| T |
50177378 |
gacatcctcaaactcgtcttgggtttcagcttcttcatctgccgatgagtcgggtgaacttgcatctagagcatcattgagatatgaaatgaagtcatcg |
50177477 |
T |
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| Q |
109 |
ctgccagaagaatgtgcgggagaatctgtaactacactcatgtattatacctgtcatccaacaaaaccacaaatgaggaagcaatgattgggagatatag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50177478 |
ctgccagaagaatgtgcgggagaatctgtaactacactcatg---tatacctgtcatccaacaaaaccacaaatgaggaagcaatgattgggagatatag |
50177574 |
T |
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| Q |
209 |
aaagtttcacagcacaataatagcggttactcaatcgggtttctacaatgatgattgcaaattg |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50177575 |
aaagtttcacagcacaataatagcggttactcaatcgggtttctacaatgatgattgcaaattg |
50177638 |
T |
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