View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3150_low_26 (Length: 282)
Name: NF3150_low_26
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 42198281 - 42198029
Alignment:
| Q |
12 |
agagaggaatggactgagaggaaaatatcccaaagagatacctaacaagtttatgaatggaaccagttttggaaacttgaagacatcagacataaatgtc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42198281 |
agagaggaatggactgagaggaaaatatcccaaagagatatctaacaagtttatgaatggaaccagttttggaaacttgaagacatcagacataagtgtc |
42198182 |
T |
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| Q |
112 |
tgaaattaagaggtatggcttttagtgtggcatataatgagacaattcgttctgaggataacatgaagttatgcacttgtgttggttctatgatacacaa |
211 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42198181 |
tgaaattaaga--tatggcttttagtgtggcatataatgagacaattcgttctgaggataacatgaagttatgcacttgtgttggttctatgatacacag |
42198084 |
T |
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| Q |
212 |
cgtgtcttttgaattccataactccgtcataatagcattggttgcaataggtata |
266 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
42198083 |
cgtgtcttttgaattccataactccgtgataacagcattggttgcaataggtata |
42198029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 42207149 - 42206897
Alignment:
| Q |
12 |
agagaggaatggactgagaggaaaatatcccaaagagatacctaacaagtttatgaatggaaccagttttggaaacttgaagacatcagacataaatgtc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42207149 |
agagaggaatggactgagaggaaaatatcccaaagagatatctaacaagtttatgaatggaaccagttttggaaacttgaagacatcagacataagtgtc |
42207050 |
T |
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| Q |
112 |
tgaaattaagaggtatggcttttagtgtggcatataatgagacaattcgttctgaggataacatgaagttatgcacttgtgttggttctatgatacacaa |
211 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42207049 |
tgaaattaaga--tatggcttttagtgtggcatataatgagacaattcgttctgaggataacatgaagttatgcacttgtgttggttctatgatacacag |
42206952 |
T |
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| Q |
212 |
cgtgtcttttgaattccataactccgtcataatagcattggttgcaataggtata |
266 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
42206951 |
cgtgtcttttgaattccataactccgtgataacagcattggttgcaataggtata |
42206897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 42216017 - 42215765
Alignment:
| Q |
12 |
agagaggaatggactgagaggaaaatatcccaaagagatacctaacaagtttatgaatggaaccagttttggaaacttgaagacatcagacataaatgtc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42216017 |
agagaggaatggactgagaggaaaatatcccaaagagatatctaacaagtttatgaatggaaccagttttggaaacttgaagacatcagacataagtgtc |
42215918 |
T |
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| Q |
112 |
tgaaattaagaggtatggcttttagtgtggcatataatgagacaattcgttctgaggataacatgaagttatgcacttgtgttggttctatgatacacaa |
211 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42215917 |
tgaaattaaga--tatggcttttagtgtggcatataatgagacaattcgttctgaggataacatgaagttatgcacttgtgttggttctatgatacacag |
42215820 |
T |
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| Q |
212 |
cgtgtcttttgaattccataactccgtcataatagcattggttgcaataggtata |
266 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
42215819 |
cgtgtcttttgaattccataactccgtgataacagcattggttgcaataggtata |
42215765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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