View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3150_low_27 (Length: 266)
Name: NF3150_low_27
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 3962803 - 3962613
Alignment:
| Q |
20 |
tgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatccaaaaagtattcatgcttcatataatatcacattgtgcttgtgcatcttata |
119 |
Q |
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| T |
3962803 |
tgtcggtgttggatacgacgcatgtcaaacaccatgacacgtttaatccaagaagtattcatactccatataatatcacattgtgcttgtgcatcttata |
3962704 |
T |
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| Q |
120 |
ctttgctgtttaaataatagaaatgaagtgatactaaaaaaggtgaatttctcttccaatagagtaaatagccattgctatcacttttgtg |
210 |
Q |
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| T |
3962703 |
ctttgctgtttaaataatagaaatgaattgatactaaaaatggtgaatttctcttccaatagagtaaatagccattgctatcacttttgtg |
3962613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 13997932 - 13998126
Alignment:
| Q |
20 |
tgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatccaaaaagtattcatgcttcatataatatcacattgtgcttgtgcatcttata |
119 |
Q |
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| T |
13997932 |
tgtcggtgttggagacgacacatgtcaaacaccatgacacgtctaatccaag------tcatactccatataatatcacattgtgcttgtgcatcttata |
13998025 |
T |
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| Q |
120 |
ctttgctgtttaaataatagaaatgaagtgatactaaaaaaggtgaatttctcttccaatagagtaaatagccattgctatcacttttgtggacataact |
219 |
Q |
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| T |
13998026 |
ctttgctgtttaaataatagaaatgaagtgatactaaaaatggtgaatttctcttccaatagagtaaatagccattgctatcacttttgtggacataact |
13998125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 38078671 - 38078596
Alignment:
| Q |
20 |
tgtcggtgttggatacgacacatgtcaaacaccatgacacgtctaatccaaaaagtattcatgcttcatataatat |
95 |
Q |
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| T |
38078671 |
tgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgaggagtattcgtgcttcatagaatat |
38078596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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