View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3150_low_28 (Length: 256)
Name: NF3150_low_28
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 40736740 - 40736501
Alignment:
| Q |
1 |
atctaatttgaattgaatgcaacttgtggattacgtaattagttaaccatttaacagtgcttaaaactatatctcaatatagaaagaatatatttaatga |
100 |
Q |
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| T |
40736740 |
atctaatttgaattgaatgcaacttgtggattacgtaattagttaaccatttaacagtgcttaaaactatatctcaatatagaaagaatatatttaatga |
40736641 |
T |
|
| Q |
101 |
aactactattagaataattacatgctttaaaaactatatgttccagccaaccacctaaacaactagagtttgaaaggtaatgtgtaccnnnnnnncgata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40736640 |
aactactattagaataattacatgctttaaaaactatatgttccagccaaccacctaaacaactagagtttgaaaggtaatgtgtaccaaaaaaacgata |
40736541 |
T |
|
| Q |
201 |
attaggaaggaagttagttttgtttgtattttaatttcat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
40736540 |
attaggaaggaagttagttttgtttgtattttaatttcat |
40736501 |
T |
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