View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3150_low_31 (Length: 250)
Name: NF3150_low_31
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_low_31 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 75 - 250
Target Start/End: Complemental strand, 32464862 - 32464687
Alignment:
| Q |
75 |
cctccactcattgttgtcaacaagaatagaagtaagtccatttccactatgacgacttgacataatgtcatgagaatacttagaatttgcatcttcttct |
174 |
Q |
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| T |
32464862 |
cctccactcattgttgtcaacaagaatagaagtaagtccatttccactacgacgacttgacataatgtcatgagaatacttagaatttgcatcttcttct |
32464763 |
T |
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| Q |
175 |
ccgagtcaaagtaatcgagattgttaccaacaaatacaggtatacaagataaagaatgtaaatcagccgtaaaccc |
250 |
Q |
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| T |
32464762 |
ccgagtcaaagtaaccgagattgctgccaacaaataccggtatacaagataaagaatgtaaatcagccataaaccc |
32464687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 32465851 - 32465782
Alignment:
| Q |
13 |
aatatgtgccttgaaatgagcaacaaaataagaaaaaacaacactatgcatattacacactccctccact |
82 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32465851 |
aatatgtgctttgaaatgagcaacaaaataagaaaaaacaacactatgcatattacacactccctccact |
32465782 |
T |
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