View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3150_low_32 (Length: 250)
Name: NF3150_low_32
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 50176989 - 50176820
Alignment:
| Q |
1 |
cagacttttattatagtttaataccagtaagctgctcactagctactttcaatccnnnnnnnnaagtgattatcaagaattgacaggtttgttttaggag |
100 |
Q |
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| T |
50176989 |
cagacttttattatagtttaataccagtaagctgctcactagctactttcaatc-ttttttttaagtgattatcaagaattgacaggtttgttttaggag |
50176891 |
T |
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| Q |
101 |
tgattcttgtttctgaaaaatcatgaatggtcgttgtgtaatgttttaacttttcattacattcaggacat |
171 |
Q |
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| T |
50176890 |
tgattcttgtttccgaaaaatcatgaatggtcgttgtgtaatgttttaacttttcattacattcaggacat |
50176820 |
T |
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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 50176788 - 50176727
Alignment:
| Q |
170 |
atggcctgaatcttgtagcgtctttctttccccgttgactctaatgaatattaccaccggtta |
232 |
Q |
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| T |
50176788 |
atggcctgaatcttgtagcgtctttctttccccgtt-actctaatgattattaccaccggtta |
50176727 |
T |
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