View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3150_low_34 (Length: 242)
Name: NF3150_low_34
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 15853341 - 15853122
Alignment:
| Q |
1 |
caaattaaggatgtctttaacaagattgaggacttccccaaacaaaagttaagacccattgccttgtatttgagtgttggtatagtacaccatgagggtg |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15853341 |
caaattaaggatgtctttaacaagactgaggacttccccaaacaaaagttaagacccattgccttgtatttgagtgttggtatagtacaccatgagggtg |
15853242 |
T |
|
| Q |
101 |
agaaatgggctacacatcgaaagatagtcaatccggcattccatatagaaaaattgaaagtaagattattacttagctaattatttcaattttgcaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15853241 |
agaaatgggctacacatcgaaagatagtcaatccggcattccatatagaaaaattgaaagtaaggttattacttagctaattatttcaattttgcaaatt |
15853142 |
T |
|
| Q |
201 |
gaatttctaacttttcttct |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
15853141 |
gaatttctaacttttcttct |
15853122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 15846513 - 15846294
Alignment:
| Q |
1 |
caaattaaggatgtctttaacaagattgaggacttccccaaacaaaagttaagacccattgccttgtatttgagtgttggtatagtacaccatgagggtg |
100 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||||||||||| |||||| | ||||| || |||||| |||||||||||| |||||| ||||||| |
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| T |
15846513 |
caaattaaggaaatctttaacaggatggaggacttccccaaatcaaagttcatctccatttccaagtatttcggtgttggtatagcacaccaagagggtg |
15846414 |
T |
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| Q |
101 |
agaaatgggctacacatcgaaagatagtcaatccggcattccatatagaaaaattgaaagtaagattattact-tagctaattatttcaattttgcaaat |
199 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||| ||| |
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| T |
15846413 |
agaaatgggctaaacatcgaaagatagtcaatccggcattccacatagaaaaattgaaagtaaggttattgctctagctaattatttcaattttg-taat |
15846315 |
T |
|
| Q |
200 |
tgaatttctaacttttcttct |
220 |
Q |
| |
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||||||||||| ||||||||| |
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| T |
15846314 |
tgaatttctaaattttcttct |
15846294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 15867089 - 15866870
Alignment:
| Q |
1 |
caaattaaggatgtctttaacaagattgaggacttccccaaacaaaagttaagacccattgccttgtatttgagtgttggtatagtacaccatgagggtg |
100 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||| || |||| | |||| ||| ||||||||| ||||||||| |||| |||||||| |
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| T |
15867089 |
caaattaaggaagtctttaacaagatcgaggacttccccaaaccaatattaaaatccatcgccaagtatttgagcgttggtataatacattatgagggta |
15866990 |
T |
|
| Q |
101 |
agaaatgggctacacatcgaaagatagtcaatccggcattccatatagaaaaattgaaagtaagattattacttagctaattatttcaattttgcaaatt |
200 |
Q |
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|
|||||||||||| |||| | ||||| | ||||||||||||||| ||||||||||||||||||| ||||| ||| ||||| || |||||||||||||| |
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| T |
15866989 |
agaaatgggctaaacataggaagatcgccaatccggcattccacctagaaaaattgaaagtaaggttattgctttaataattcttgcaattttgcaaatt |
15866890 |
T |
|
| Q |
201 |
gaatttctaacttttcttct |
220 |
Q |
| |
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||||||||| |||| |||| |
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| T |
15866889 |
aaatttctaatttttattct |
15866870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 15860703 - 15860483
Alignment:
| Q |
1 |
caaattaaggatgtctttaacaagattgaggacttccccaaacaaaagttaagacccattgccttgtatttgagtgttggtatagtacaccatgagggtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| |||| ||| |||||||| ||||||||| || | ||||||||| |
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| T |
15860703 |
caaattaaggatgtctttaacaagattgatgacttccccaaaccaaaactaagatccatcgccaagtatttgaacgttggtatactagatcatgagggta |
15860604 |
T |
|
| Q |
101 |
agaaatgggctacacatcgaaagatagtcaatccggcattccatatagaaaaattgaaagtaagattattac-ttagctaattatttcaattttgcaaat |
199 |
Q |
| |
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|||||||||||| |||| | ||||| | |||||| |||||||| ||||||||||||||||||| ||||| | ||| ||||| || |||||||| |||| |
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| T |
15860603 |
agaaatgggctaaacataggaagatcgccaatccagcattccacctagaaaaattgaaagtaaggttattgctttaattaattcttgcaattttgtaaat |
15860504 |
T |
|
| Q |
200 |
tgaatttctaacttttcttct |
220 |
Q |
| |
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| ||||||||| |||| |||| |
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|
| T |
15860503 |
taaatttctaatttttattct |
15860483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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