View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3150_low_35 (Length: 238)
Name: NF3150_low_35
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_low_35 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
| [»] scaffold0078 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 8294304 - 8294525
Alignment:
| Q |
1 |
cttgttttataatcccagtttcatcatcaacctttggcctcactgccactttgagtacatcagtgagtaattttgcattcatcctttgctctgcaaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8294304 |
cttgttttataatcccagtttcatcatcaacctttggcctcactgccactttgagtacatcagtgagtaattttgcattcatcctttgctctgcaaacaa |
8294403 |
T |
|
| Q |
101 |
tggccatgcaatcaacggcacgccgttaaccacactctccaaagttgaactccaaccacaatgacttaaaaacccaccaattgatccatgaccaagaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8294404 |
tggccatgcaatcaacggcacgccgttaaccacactctccaaagttgaactccaaccacaatgacttaaaaacccaccaattgatccatgaccaagaatc |
8294503 |
T |
|
| Q |
201 |
tcaacttgtggtgcccatgatg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8294504 |
tcaacttgtggtgcccatgatg |
8294525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 33257448 - 33257230
Alignment:
| Q |
4 |
gttttataatcccagtttcatcatcaacctttggcctcactgccactttgagtacatcagtgagtaattttgcattcatcctttgctctgcaaacaatgg |
103 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33257448 |
gttttattatcccagtttcaccatcaacctttggccttactgccacttttagcacatcagtgagtaattttgcattcattctttgctctgcaaacaatgg |
33257349 |
T |
|
| Q |
104 |
ccatgcaatcaacggcacgccgttaaccacactctccaaagttgaactccaaccacaatgacttaaaaacccaccaattgatccatgaccaagaatctca |
203 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33257348 |
ccatgcaatcaacggaacgccgttaaccacactctccaaagttgaactccaaccacaatgacttaaaaaaccaccaattgatccatgaccaagaatctca |
33257249 |
T |
|
| Q |
204 |
acttgtggtgcccatgatg |
222 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
33257248 |
acttgtggtgcccatgatg |
33257230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 845019 - 845092
Alignment:
| Q |
144 |
gttgaactccaaccacaatgacttaaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgccca |
217 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||| | |||||||||||| |||| |||||||||||| |
|
|
| T |
845019 |
gttgaattccaaccacaatgagttaaaaacccaccaattgaactatgaccaagaatttcaatttgtggtgccca |
845092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 870303 - 870376
Alignment:
| Q |
144 |
gttgaactccaaccacaatgacttaaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgccca |
217 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||| | |||||||||||| |||| |||||||||||| |
|
|
| T |
870303 |
gttgaattccaaccacaatgagttaaaaacccaccaattgaactatgaccaagaatttcaatttgtggtgccca |
870376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 1566 - 1348
Alignment:
| Q |
4 |
gttttataatcccagtttcatcatcaacctttggcctcactgccactttgagtacatcagtgagtaattttgcattcatcctttgctctgcaaacaatgg |
103 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1566 |
gttttattatcccagtttcaccatcaacctttggccttactgccacttttagcacatcagtgagtaattttgcattcattctttgctctgcaaacaatgg |
1467 |
T |
|
| Q |
104 |
ccatgcaatcaacggcacgccgttaaccacactctccaaagttgaactccaaccacaatgacttaaaaacccaccaattgatccatgaccaagaatctca |
203 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1466 |
ccatgcaatcaacggtacgccgttaaccacactctccaaagttgaactccaaccacaatgacttaaaaaaccaccaattgatccatgaccaagaatctca |
1367 |
T |
|
| Q |
204 |
acttgtggtgcccatgatg |
222 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1366 |
acttgtggtgcccatgatg |
1348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 906280 - 906070
Alignment:
| Q |
12 |
atcccagtttcatcatcaacctttggcctcactgccactttgagtacatcagtgagtaattttgcattcatcctttgctctgcaaacaatggccatgcaa |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||| ||||| || | |||| | |||||||||||||| |||||||| | |||||||||| |
|
|
| T |
906280 |
atcccactttcatcatcaacctttggcctcacagccactttgagcacatctgtcaataatctcgcattcatcctttgttctgcaaatagaggccatgcaa |
906181 |
T |
|
| Q |
112 |
tcaacggcacgccgttaaccacactctccaaagttgaactccaaccacaatgacttaaaaacccaccaattgatccatgaccaagaatctcaacttgtgg |
211 |
Q |
| |
|
||| ||||| || ||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
906180 |
tcacaggcaccccattaaccacagtctccaaagttgaaccccaaccacaatgactcaaaaacccaccaattgatccatgaccaagaatctcaacttgtgg |
906081 |
T |
|
| Q |
212 |
tgcccatgatg |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
906080 |
tgcccatgatg |
906070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 894363 - 894573
Alignment:
| Q |
12 |
atcccagtttcatcatcaacctttggcctcactgccactttgagtacatcagtgagtaattttgcattcatcctttgctctgcaaacaatggccatgcaa |
111 |
Q |
| |
|
|||||| |||||||||||| |||||||||||| ||||| ||||| |||| || | |||||| |||||||||||||| || ||||| | |||||||||| |
|
|
| T |
894363 |
atcccactttcatcatcaatctttggcctcacagccaccttgagctcatctgtcaataatttggcattcatcctttgttcagcaaatagaggccatgcaa |
894462 |
T |
|
| Q |
112 |
tcaacggcacgccgttaaccacactctccaaagttgaactccaaccacaatgacttaaaaacccaccaattgatccatgaccaagaatctcaacttgtgg |
211 |
Q |
| |
|
||| ||||| || ||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
894463 |
tcataggcacaccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaaaccaccaattgatccatgaccaagaatctcaacttgtgg |
894562 |
T |
|
| Q |
212 |
tgcccatgatg |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
894563 |
tgcccatgatg |
894573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 548604 - 548821
Alignment:
| Q |
5 |
ttttataatcccagtttcatcatcaacctttggcctcactgccactttgagtacatcagtgagtaattttgcattcatcctttgctctgcaaacaatggc |
104 |
Q |
| |
|
||||| ||||||| ||||||||||| |||||||||||||||||||||| ||||| |||||| || || ||||| || ||||| |||||||||||| |
|
|
| T |
548604 |
ttttacaatcccatcttcatcatcaatttttggcctcactgccactttgaaaacatcggtgagtgatgcagcgttcattctctgctcagcaaacaatggc |
548703 |
T |
|
| Q |
105 |
catgcaatcaacggcacgccgttaaccacactctccaaagttgaactccaaccacaatgacttaaaaacccaccaattgatccatgaccaagaatctcaa |
204 |
Q |
| |
|
|| ||||||| ||||| || | ||| | || ||| ||| |||||||||||||||||||| | ||||| |||||| |||| | ||||| |||||| |||| |
|
|
| T |
548704 |
caagcaatcataggcacaccataaactaaaccctctaaacttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaa |
548803 |
T |
|
| Q |
205 |
cttgtggtgcccatgatg |
222 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
548804 |
cttgtggagcccatgatg |
548821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 23424000 - 23423783
Alignment:
| Q |
5 |
ttttataatcccagtttcatcatcaacctttggcctcactgccactttgagtacatcagtgagtaattttgcattcatcctttgctctgcaaacaatggc |
104 |
Q |
| |
|
||||| ||||||| ||||||||||| |||||||||||||||||||||| ||||| |||||| | ||| ||||| || ||||| |||||||||||| |
|
|
| T |
23424000 |
ttttacaatcccatcttcatcatcaatttttggcctcactgccactttgaaaacatcggtgagtgttgctgcgttcattctctgctcagcaaacaatggc |
23423901 |
T |
|
| Q |
105 |
catgcaatcaacggcacgccgttaaccacactctccaaagttgaactccaaccacaatgacttaaaaacccaccaattgatccatgaccaagaatctcaa |
204 |
Q |
| |
|
|| ||||||| ||||| || | ||| | || ||| ||| |||||||||||||||||||| | ||||| |||||| |||| | ||||| |||||| |||| |
|
|
| T |
23423900 |
caagcaatcataggcacaccataaactaaaccctctaaacttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaa |
23423801 |
T |
|
| Q |
205 |
cttgtggtgcccatgatg |
222 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
23423800 |
cttgtggagcccatgatg |
23423783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 75 - 184
Target Start/End: Original strand, 10201827 - 10201936
Alignment:
| Q |
75 |
gcattcatcctttgctctgcaaacaatggccatgcaatcaacggcacgccgttaaccacactctccaaagttgaactccaaccacaatgacttaaaaacc |
174 |
Q |
| |
|
||||||||| ||||||| ||| | | ||||||||||||||| ||||| || || ||||||||||| | ||||||| |||||||||||||||| | ||||| |
|
|
| T |
10201827 |
gcattcatcttttgctcagcatagagtggccatgcaatcaaaggcacaccattcaccacactctcaagagttgaattccaaccacaatgactcacaaacc |
10201926 |
T |
|
| Q |
175 |
caccaattga |
184 |
Q |
| |
|
| |||||||| |
|
|
| T |
10201927 |
ctccaattga |
10201936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 75 - 184
Target Start/End: Original strand, 10208900 - 10209009
Alignment:
| Q |
75 |
gcattcatcctttgctctgcaaacaatggccatgcaatcaacggcacgccgttaaccacactctccaaagttgaactccaaccacaatgacttaaaaacc |
174 |
Q |
| |
|
||||||||| ||||||| ||| | | ||||||||||||||| ||||| || || ||||||||||| | ||||||| |||||||||||||||| | ||||| |
|
|
| T |
10208900 |
gcattcatcttttgctcagcatagagtggccatgcaatcaaaggcacaccattcaccacactctcaagagttgaattccaaccacaatgactcacaaacc |
10208999 |
T |
|
| Q |
175 |
caccaattga |
184 |
Q |
| |
|
| |||||||| |
|
|
| T |
10209000 |
ctccaattga |
10209009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 566303 - 566377
Alignment:
| Q |
144 |
gttgaactccaaccacaatgacttaaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcccat |
218 |
Q |
| |
|
|||||| || ||||| |||||| |||||| ||| ||||||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
566303 |
gttgaattcgaaccaaaatgacataaaaatccatcaattgaactatgaccaagaatttcaacttgtggtgcccat |
566377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 560446 - 560495
Alignment:
| Q |
134 |
actctccaaagttgaactccaaccacaatgacttaaaaacccaccaattg |
183 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||||||| ||||||||| |
|
|
| T |
560446 |
actctccaaaattgaattccaaccacaatgagttaaaaatgcaccaattg |
560495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 15188 - 15276
Alignment:
| Q |
134 |
actctccaaagttgaactccaaccacaatgacttaaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatg |
222 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||| ||||||| ||| | ||| ||| || |||||||| ||||||||||||| |
|
|
| T |
15188 |
actctccaaaactgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatg |
15276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 57656 - 57568
Alignment:
| Q |
134 |
actctccaaagttgaactccaaccacaatgacttaaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatg |
222 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||| ||||||| ||| | ||| ||| || |||||||| ||||||||||||| |
|
|
| T |
57656 |
actctccaaaactgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatg |
57568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 3109 - 3067
Alignment:
| Q |
138 |
tccaaagttgaactccaaccacaatgacttaaaaacccaccaa |
180 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
3109 |
tccaaagtcgaattccaaccacaatgacttaaaaatccaccaa |
3067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 16566765 - 16566723
Alignment:
| Q |
138 |
tccaaagttgaactccaaccacaatgacttaaaaacccaccaa |
180 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
16566765 |
tccaaagtcgaattccaaccacaatgacttaaaaatccaccaa |
16566723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 16598897 - 16598939
Alignment:
| Q |
138 |
tccaaagttgaactccaaccacaatgacttaaaaacccaccaa |
180 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
16598897 |
tccaaagtcgaattccaaccacaatgacttaaaaatccaccaa |
16598939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 48398584 - 48398540
Alignment:
| Q |
146 |
tgaactccaaccacaatgacttaaaaacccaccaattgatccatg |
190 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
48398584 |
tgaattccaaccacaatgagttaaaaacccaccagttgacccatg |
48398540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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