View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3150_low_37 (Length: 236)
Name: NF3150_low_37
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 22585823 - 22585602
Alignment:
| Q |
1 |
tttgagtaagattgagaataagtatactttgaaaatcaaatgctttggcaatgggttgggtgatgatggatataggtggaggaagtatggtcagaaatcc |
100 |
Q |
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| T |
22585823 |
tttgagtaagattgagaataagtatactttgaaaatcaaatgctttggcaatgggttgggtgatgatggatataggtggaggaagtatggtcagaaatcc |
22585724 |
T |
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| Q |
101 |
atcaagaatagcccaaatcctaggtaaactcttgattttcttttacatgtaatgtaatggggccttcacttttatatattttctttgttttctcatttac |
200 |
Q |
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| T |
22585723 |
atcaagaatagcccaaatcctaggtaaactcttgattttcttttacatgtaatgtaatggggccttcacttttatatattttctttgttttctcatttac |
22585624 |
T |
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| Q |
201 |
ttgtgaattttttatagatatt |
222 |
Q |
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|||||| |||||| |||||||| |
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| T |
22585623 |
ttgtgatttttttttagatatt |
22585602 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 3669870 - 3669906
Alignment:
| Q |
61 |
tgatgatggatataggtggaggaagtatggtcagaaa |
97 |
Q |
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| T |
3669870 |
tgatgatggatataggtggaggaaatatggacagaaa |
3669906 |
T |
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