View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3150_low_39 (Length: 231)

Name: NF3150_low_39
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3150_low_39
NF3150_low_39
[»] chr7 (1 HSPs)
chr7 (4-205)||(7257087-7257288)
[»] chr5 (2 HSPs)
chr5 (32-67)||(43493685-43493720)
chr5 (36-70)||(21018060-21018094)
[»] chr4 (1 HSPs)
chr4 (36-70)||(48414210-48414244)
[»] chr8 (1 HSPs)
chr8 (37-74)||(32983812-32983849)
[»] chr2 (1 HSPs)
chr2 (27-67)||(26802261-26802301)


Alignment Details
Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 7257087 - 7257288
Alignment:
Q  4 ttttcatatcaacaaataatgtttagagtaacgatatttatacaattattttatgataaattttaaaacaactcnnnnnnnnnnnnn-attggtcaagaa 102  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||               ||||||||  ||    
T  7257087 ttttcatatcaacaaataatgtttagagtaacgatatttatacagttattttatgataaattttaaaacaactttctttttcttttttattggtcataaa 7257186  T
Q  103 cgatagagattgaaagataaagagagagcgaaaaacataataaaaatatgagataaaggaaatggttgtacaataaacaaatcaaatgaactggttacac 202  Q
    | ||| |||| |||||| || |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  7257187 caataaagatagaaagagaacgagagagcgaaaaacataataaaaatataagagaaaggaaatggttgtacaataaacaaatc-aatgaactggttacac 7257285  T
Q  203 aca 205  Q
    |||    
T  7257286 aca 7257288  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 43493685 - 43493720
Alignment:
Q  32 taacgatatttatacaattattttatgataaatttt 67  Q
    ||||||||||||||||||||||||||||||| ||||    
T  43493685 taacgatatttatacaattattttatgataattttt 43493720  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 21018060 - 21018094
Alignment:
Q  36 gatatttatacaattattttatgataaattttaaa 70  Q
    ||||||||||||||||||||||||||| |||||||    
T  21018060 gatatttatacaattattttatgataatttttaaa 21018094  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 48414210 - 48414244
Alignment:
Q  36 gatatttatacaattattttatgataaattttaaa 70  Q
    |||||||||||||||||||| ||||||||||||||    
T  48414210 gatatttatacaattattttgtgataaattttaaa 48414244  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 32983812 - 32983849
Alignment:
Q  37 atatttatacaattattttatgataaattttaaaacaa 74  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  32983812 atatttgtacaattattttatgacaaattttaaaacaa 32983849  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 26802301 - 26802261
Alignment:
Q  27 tagagtaacgatatttatacaattattttatgataaatttt 67  Q
    ||||| ||||||||||||||||||||||| |||||| ||||    
T  26802301 tagagaaacgatatttatacaattattttgtgataattttt 26802261  T

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