View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3150_low_42 (Length: 227)
Name: NF3150_low_42
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7174634 - 7174407
Alignment:
| Q |
1 |
ttttctcctaccacctccgtgtccccaccagaagccatttatcatcttttcaatttcgtccaccagagtggtaggaagcaaaaacacactcataatgtat |
100 |
Q |
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| T |
7174634 |
ttttctcctactacctccgtgtccccaccagaagccatttaccatcttttcaatttcgtccaccagagtggtaggaagcaaaaacacactcataatgtat |
7174535 |
T |
|
| Q |
101 |
gaagga------tgtaagacagattttatcattatctctcgcctggcttttgataagcatttgctactccaaatccttaag-taacgttattgttaaaat |
193 |
Q |
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| T |
7174534 |
gaaggaattacctgtaagacagattttatcattacctctcgcccggcttttgataagcattggctactccaaatccttaagcaaacgttattgttaaaat |
7174435 |
T |
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| Q |
194 |
aaaagagtgtgatgaagtattaaatact |
221 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
7174434 |
aaaagagtgtgatgaagtattaaatact |
7174407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 7158707 - 7158757
Alignment:
| Q |
171 |
ttaagtaacgttattgttaaaataaaagagtgtgatgaagtattaaatact |
221 |
Q |
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| T |
7158707 |
ttaagtaacattattgttaaaataaaatagtgtgatgaagtattaaatact |
7158757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 7151858 - 7151906
Alignment:
| Q |
171 |
ttaagtaacgttattgttaaaataaaagagtgtgatgaagtattaaata |
219 |
Q |
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| T |
7151858 |
ttaagtaacattattgttaaaataaaatagtgtgatgaagtattaaata |
7151906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 34672176 - 34672095
Alignment:
| Q |
23 |
ccccaccagaagccatttatcatcttttcaatttcgtccaccagagtggtaggaagcaaaaacacactcataatgtatgaag |
104 |
Q |
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| T |
34672176 |
ccccaccaaaagccatttatcattttttctatttggtctacaagtgtggtaggaagaaggaacacactcataacatatgaag |
34672095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 8723229 - 8723181
Alignment:
| Q |
14 |
cctccgtgtccccaccagaagccatttatcatcttttcaatttcgtcca |
62 |
Q |
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| T |
8723229 |
cctccatgtccccaccagaaagcatttatcatcttttcaatttcatcca |
8723181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 15788562 - 15788514
Alignment:
| Q |
14 |
cctccgtgtccccaccagaagccatttatcatcttttcaatttcgtcca |
62 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||| |||| |
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| T |
15788562 |
cctccatgtccccaccagaaagcatttatcatcttttcaatttcatcca |
15788514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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