View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3150_low_7 (Length: 597)
Name: NF3150_low_7
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Complemental strand, 43713670 - 43713110
Alignment:
| Q |
1 |
agcttttggacgtacattcttggttcttgttttgcagttatgttcttgatgcttttgtcattgcacccattctttgtaagtgatgaaggggattgcatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43713670 |
agcttttggacgtacattcttggttcttgttttgcagttatgttcttgatgcttttgtcattgcacccattctttgtaagtgatgaaggggattgcatat |
43713571 |
T |
|
| Q |
101 |
ttatttgaggcatttattggctcggtggtcttagtgtgtttgtgagtctaagagtttgcagtgttgaaatgcctgcgagtttaggaagctgaggttccca |
200 |
Q |
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| T |
43713570 |
ttatttgaggcatttattggctcggtggtcttagtgtgtttgtgagtctaagagtttgcagtgttgaaatgcctgcgagtttaggaag------------ |
43713483 |
T |
|
| Q |
201 |
ttgatttcaaatgatgttggattcaggaaactgtggagtttagcggcataacttttctattgattagtgacaatttagaaaagccaacatcctcgtggta |
300 |
Q |
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| T |
43713482 |
------tcaaatgatgttggattcaggaaactgtggagtttagcggcataacttttctattgattagtgacaatttagaaaagccaacatcctcgtggta |
43713389 |
T |
|
| Q |
301 |
ctaccaaggccagtgctgatcctggacactaccgaggcctcataatgtgatttcaatgtcatgatgcctgatcggaaattaattgaaaattaaacaatga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43713388 |
ctaccaaggccagtgctgatcctggacactaccgaggcctcataatgtgatttcaatgtcatgatgcctgatcggaaattaattgaaaattaaacaatga |
43713289 |
T |
|
| Q |
401 |
tattacatataatatttcagtgaaacttcgttaaggaaaataaaatcaactaacaaggagtaagcattaatgtaccggtcgcaaaaatgagcatagcgaa |
500 |
Q |
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| T |
43713288 |
tattacatataatatttcagtgaaacttcgttaaggaaaataaaatcaactaacaaggagtaagcattaatgtaccggtcgcgaaaatgagcatagcgaa |
43713189 |
T |
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| Q |
501 |
tggaggaaaatcgagagaggggagggatgaggtgtggttaggagttaaagttgaaatactgagtggctatgaggcaaaa |
579 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43713188 |
tggaggaaaatcgagagaggggagggatgaggtgtggttaggagttaaagttgaaatactgagtggctatgaagcaaaa |
43713110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 52894107 - 52894351
Alignment:
| Q |
1 |
agcttttggacgtacattcttggttcttgttttgcagttatgttcttgatgcttttgtcattgcacccattctttgtaagtgatgaaggggattgcatat |
100 |
Q |
| |
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|||||||||| ||||||| |||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| |||||| ||||||| || |||||||| |
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| T |
52894107 |
agcttttggatgtacattgttggttcttgttttgctgttaagttctcga-gcttttgtccttgcacccattctctgtaagagatgaagagggttgcatat |
52894205 |
T |
|
| Q |
101 |
ttatttgaggcatttatt-ggctcggtggtcttagtgtgtttgtgagtctaagagtttgcagtgttgaaatgcctgcgagtttaggaagctgaggttccc |
199 |
Q |
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|||||| ||||||||||| ||||| ||| || ||| || | || ||||||||||||||||| ||||||||||||||||||||| | || ||||||||| |
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| T |
52894206 |
ttatttcaggcatttatttggctcagtgatcaaagttggtctatgggtctaagagtttgcagttttgaaatgcctgcgagtttagtatgccgaggttccc |
52894305 |
T |
|
| Q |
200 |
attgatttcaaatgatgttggattcaggaaactgtggagtttagcg |
245 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
52894306 |
attgatttcagaggatgttggattcaggaaactgtggagtttagcg |
52894351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 413
Target Start/End: Complemental strand, 42572532 - 42572471
Alignment:
| Q |
352 |
ttcaatgtcatgatgcctgatcggaaattaattgaaaattaaacaatgatattacatataat |
413 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||| |||| ||||||||||| |
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| T |
42572532 |
ttcaatgtcatgatacctgatcagaaattaattgaaaattaaaccgtgatgttacatataat |
42572471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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