View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3150_low_8 (Length: 566)
Name: NF3150_low_8
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 318
Target Start/End: Original strand, 44707989 - 44708290
Alignment:
| Q |
17 |
tttcatcaatttgtgaattgatagaaccattgatgtatttgcatgcacaaatttcaccctcccatcaaccttaatagggatcaccgtatttatattaatt |
116 |
Q |
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| T |
44707989 |
tttcatcaatttgtgaattgatagaaccattgatgtatttgcatgcacaaatttcaccctcccatcaaccttattagggatcaccgtatttatattaatt |
44708088 |
T |
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| Q |
117 |
tatttattacaaatcatagattttcattaatcatgtctaaggtagattgaatggtctacacaaaatgaatgacatgtaaaaacatattgagtgtatgtat |
216 |
Q |
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| T |
44708089 |
tatttattacaaatcatagattttcattaatcgtgtctaaggtagattgaatggtctacacaaaatgaatgacatgtaaaaacatattgagtgtatgtat |
44708188 |
T |
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| Q |
217 |
ttgaagaatttctcaacaagcttcgtaaaaaacaagaaaataacgacatatatagaatacaataataataactagatccatatttaggaacacgtaaaaa |
316 |
Q |
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| T |
44708189 |
ttgaagaatttctcaacaagcttcgtaaaaaacaagaaaatcacgacatatatagaatgcaataataataactagatccatatttaggaacacgtaaaaa |
44708288 |
T |
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| Q |
317 |
tc |
318 |
Q |
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|| |
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| T |
44708289 |
tc |
44708290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 382 - 558
Target Start/End: Original strand, 44708354 - 44708522
Alignment:
| Q |
382 |
cataccgacatgaatgtttgtcagatacgaaatagtagcaacaagcaatggagagagaatgggatagttggttgatgaatgaaagaggatgaagaaaaat |
481 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
44708354 |
cataccgacatgaagttttgtcagatacgaaatagtagcaacaagcaatggagagataatgggatagttggttg----atgaaagaggatgaagaaaaat |
44708449 |
T |
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| Q |
482 |
gtattattgttaatgaatgaatacaaaaacaaggaagggtattctggtaatttgaaaaatggaatatgattcttctc |
558 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44708450 |
gta----tgttaatgaatgaatacaaaaacagggaagggtattctggtaatttgaaaaatggaatatgattcttctc |
44708522 |
T |
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