View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3150_low_9 (Length: 560)
Name: NF3150_low_9
Description: NF3150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3150_low_9 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 20 - 550
Target Start/End: Original strand, 28290 - 28806
Alignment:
| Q |
20 |
tcacctacataatatgtacttttataccattgatgttgatgcagccacaacttcatcagtgacaaatattgcttctttttcaacgattgcagccttcatt |
119 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28290 |
tcacctacataatatgaacttttatatcattgatgttgatgcagccacaacttcatcagtgacaaatattgcttctttttcaacgattgcagccttcatt |
28389 |
T |
|
| Q |
120 |
tcacataatcacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28390 |
tcacataatcacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattc |
28475 |
T |
|
| Q |
220 |
caacctttttcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatc |
319 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28476 |
caacctttttcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatc |
28575 |
T |
|
| Q |
320 |
aagtagtttcttgtcaagcaaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28576 |
aagtagtttcttgtcaagcaaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagt |
28675 |
T |
|
| Q |
420 |
gcatgacatgcaaagttataactctcattagttaatgatccttcctccaacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaac |
519 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28676 |
gcatgacatgcaaagttataactctcattggttaatgatccttcctccaacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaac |
28775 |
T |
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| Q |
520 |
aaatatcttcattaacttttctttgatgatg |
550 |
Q |
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|||||||||||||||||||||||| |||||| |
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| T |
28776 |
aaatatcttcattaacttttcttttatgatg |
28806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 20 - 550
Target Start/End: Original strand, 26396004 - 26396521
Alignment:
| Q |
20 |
tcacctacataatatgtacttttataccattgatgttgatgcagccacaacttcatcagtgacaaatattgcttctttttcaacgattgcagccttcatt |
119 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396004 |
tcacctacataatatgaacttttataccattgatattgatgcagcgacaacttcatcagtgacaaatattgcttctttttcaacgattgcagccttcatt |
26396103 |
T |
|
| Q |
120 |
tcacataatcacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26396104 |
tcacataatcacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgat--------------aaaataataaattc |
26396189 |
T |
|
| Q |
220 |
caacctttttcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattctttt-cggtgccccttttgtttttgaatcttgaggat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26396190 |
caacctttttcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattctttttcggtgccccttttgtttttgaatcttgaggat |
26396289 |
T |
|
| Q |
319 |
caagtagtttcttgtcaagcaaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396290 |
caagtagtttcttgtcaagcaaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccag |
26396389 |
T |
|
| Q |
419 |
tgcatgacatgcaaagttataactctcattagttaatgatccttcctccaacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaa |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26396390 |
tgcatgacatgcaaagttataactctcattagttaatgatccttcctccaacaattgagaggcctttggatacaaacgatcatatctctctttcttcgaa |
26396489 |
T |
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| Q |
519 |
caaatatcttcattaacttttctttgatgatg |
550 |
Q |
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||||||||||||||||||||||||| |||||| |
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| T |
26396490 |
caaatatcttcattaacttttcttttatgatg |
26396521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 331
Target Start/End: Complemental strand, 26460430 - 26460346
Alignment:
| Q |
247 |
ttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttctt |
331 |
Q |
| |
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||||||| |||||||| ||||| || ||||| ||||||||||| || |||||||| |||| || ||||||||||| |||||| |
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| T |
26460430 |
ttctcttacgacctctctcaatcccactcttgattcttttcggagctccttttgtgtttgctggtttaggatcaagtaatttctt |
26460346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 66 - 550
Target Start/End: Original strand, 275446 - 275916
Alignment:
| Q |
66 |
acaacttcatcagtgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatcagaaatcatgtta |
165 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275446 |
acaacttcatcagcgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatcagaaatcatgtta |
275545 |
T |
|
| Q |
166 |
aataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttttcacgctaccagtagattttctctttcgacctctttc |
265 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275546 |
aataataatatgttaa--------------gaagtttgataaaataataaattccaacctttttcacgctaccagtagattttctctttcgacctctttc |
275631 |
T |
|
| Q |
266 |
aatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttgtcaagcaaagtgctcttcctgctattttcttgg |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275632 |
aatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttgtcaagcaaagtgctcttcctgctattttcttgg |
275731 |
T |
|
| Q |
366 |
ctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacatgcaaagttataactctcattagttaatgatccttcct |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275732 |
ctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacatgcaaagttataactctcattagttaatgatccttcct |
275831 |
T |
|
| Q |
466 |
ccaacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaacaaatatcttcattaacttttctttgatgatg |
550 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
275832 |
ccaacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaacaaatatcttcattaacttttcttttatgatg |
275916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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