View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151B-Insertion-1 (Length: 792)
Name: NF3151B-Insertion-1
Description: NF3151B
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151B-Insertion-1 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 362 - 792
Target Start/End: Original strand, 365019 - 365436
Alignment:
| Q |
362 |
cttctacggagaagtctgccaaaagctcagacttaaccttgaatggcgtccgagcttgcccaaatattcacacataagttgcttttctaattacatgttg |
461 |
Q |
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| T |
365019 |
cttctacggagaagtctgccaaaagctcagacttaatcttgaatggcatccgagcttgcccaaatattcacacataagttgtttttctaattacatgttg |
365118 |
T |
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| Q |
462 |
gaaatattaagaatttgctcatttaaattaaaaatctccaccaacaaatgtgagtgctgcatatggcaacaaagatgaatggattctaaaaaacctatct |
561 |
Q |
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| T |
365119 |
gaaatattaagaatttgctcatttaaattaaaaatcttcaccaacaaatgtgagtgctgcatatggcaacgaagatgaatggattctaaaaaacctatct |
365218 |
T |
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| Q |
562 |
cacaaataacattttgaatagaattgttgattaccaacattcactcatcatacacttcaaatagctcggcaaaaatcatagcatttaacgatatacaact |
661 |
Q |
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| T |
365219 |
cacaaataacattttgaatagaattgttgattaccaacatt-----------cacttcaaatagctcggcaaaaatcatagcatttaacgatatacaact |
365307 |
T |
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| Q |
662 |
actattttttcataatgaattaacgataattttataccgtaaatattttgtagttatagtgatcatcctgtttctttacctctctctttatacacacaca |
761 |
Q |
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| T |
365308 |
actattttttcataatgaattaacgataattttataccataaatattttgtagttatagtgatcattccgtctctttacctctctctttat--acacaca |
365405 |
T |
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| Q |
762 |
catgtgtgcgcgcgcgcataaccaagatccg |
792 |
Q |
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| T |
365406 |
catgtgtgtgtgcgcgcataaccaagatccg |
365436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 8 - 268
Target Start/End: Original strand, 363501 - 363761
Alignment:
| Q |
8 |
catcttaatatgattctgcttaaaaatattttttattggaaaaactattattgattatgagaaattcataattaactacaacttctaaaaatatgcttat |
107 |
Q |
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| T |
363501 |
catcttaatatgattctgcttaaaaatattttttattggaaaaactattattgattatgagaaattcataattaactacaacttttaaaaatatgcttat |
363600 |
T |
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| Q |
108 |
atcatgcatcgagaagttctagtattttcccatcttggccaaagctgattattttattatatttggcatactcaattattaagaagcatgtccgaattgt |
207 |
Q |
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| T |
363601 |
atcatgcatcgagaagttctagtattttcccatcttggtcaaagctgattattttattatatttggcatactcaattattaagaagcatgtccgaattgt |
363700 |
T |
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| Q |
208 |
gtggagcttattttcattccttaatcgattatgttacttggaagaattgattatgatgcaa |
268 |
Q |
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| T |
363701 |
gtggagcttattttaattccttaatcgattatgttacttggaagaattgattatgatgcaa |
363761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 601
Target Start/End: Original strand, 24183513 - 24183556
Alignment:
| Q |
558 |
atctcacaaataacattttgaatagaattgttgattaccaacat |
601 |
Q |
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| T |
24183513 |
atctcacaaataacctgttgaatagagttgttgattaccaacat |
24183556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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