View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3151B-Insertion-12 (Length: 436)

Name: NF3151B-Insertion-12
Description: NF3151B
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3151B-Insertion-12
NF3151B-Insertion-12
[»] chr7 (4 HSPs)
chr7 (8-436)||(38904653-38905085)
chr7 (214-257)||(38713213-38713256)
chr7 (214-255)||(46056134-46056175)
chr7 (255-287)||(1431277-1431309)
[»] chr2 (3 HSPs)
chr2 (245-288)||(18525160-18525203)
chr2 (214-254)||(26484211-26484251)
chr2 (244-288)||(44438760-44438804)
[»] chr8 (1 HSPs)
chr8 (238-288)||(11059648-11059698)
[»] chr6 (1 HSPs)
chr6 (214-256)||(27889968-27890010)
[»] chr3 (2 HSPs)
chr3 (244-286)||(41057262-41057304)
chr3 (214-254)||(25185896-25185936)
[»] chr1 (1 HSPs)
chr1 (244-289)||(6292599-6292644)
[»] chr5 (1 HSPs)
chr5 (242-286)||(33961788-33961832)


Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 8 - 436
Target Start/End: Original strand, 38904653 - 38905085
Alignment:
Q  8 ctttcttccctaatctcaattcaacactctctcaatgctcttaacttaaccgttttctatattatctttctctataggtaacccttgttgatgattttag 107  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38904653 ctttcttccctaatctcaattcaacactcgctcaatgctcttaacttaaccgttttctatattatctttctctataggtaactcttgttgatgattttag 38904752  T
Q  108 acctttatatcaaaagcttgcttgttctttcatgaacaaattcttcccctcaggatatccttacaggttcattcatttttccccattcctcaattaactt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38904753 acctttatatcaaaagcttgcttgttctttcatgaacaaattcttcccctcaggatatccttacaggttcattcatttttccccattcctcaattaactt 38904852  T
Q  208 ctttctataaacaacttaattaagcttttatcttataagtgct----tatgtatgtagataagctcaattaagtcaattcaaacaatcccgtagtgacgg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38904853 ctttctataaacaacttaattaagcttttatcttataagtgcttatgtatgtatgtagataagctcaattaagtcaattcaaacaatcccgtagtgacgg 38904952  T
Q  304 ctttgtttagagtttagataaggttgttcaattactcaaatttctagcgttttcctttgtagtgtgaatgaaggttatcttagatacacgcagtttcgag 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38904953 ctttgtttagagtttagataaggttgttcaattactcaaatttctagcgttttcctttgtagtgtgaatgaaggttatcttagatacacgcagtttcgag 38905052  T
Q  404 cagtacaacatgttaccagtgctgcattgtcag 436  Q
    |||||||||||||||||||||||||||||||||    
T  38905053 cagtacaacatgttaccagtgctgcattgtcag 38905085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 38713256 - 38713213
Alignment:
Q  214 ataaacaacttaattaagcttttatcttataagtgcttatgtat 257  Q
    ||||||||||||||||||| ||||||||||||||| || |||||    
T  38713256 ataaacaacttaattaagcatttatcttataagtgattgtgtat 38713213  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 46056175 - 46056134
Alignment:
Q  214 ataaacaacttaattaagcttttatcttataagtgcttatgt 255  Q
    ||||||||||||||||||| |||||| | |||||||||||||    
T  46056175 ataaacaacttaattaagcatttatcatttaagtgcttatgt 46056134  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 1431309 - 1431277
Alignment:
Q  255 tatgtagataagctcaattaagtcaattcaaac 287  Q
    ||||||||||||||||| |||||||||||||||    
T  1431309 tatgtagataagctcaaataagtcaattcaaac 1431277  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 288
Target Start/End: Complemental strand, 18525203 - 18525160
Alignment:
Q  245 agtgcttatgtatgtagataagctcaattaagtcaattcaaaca 288  Q
    |||| |||||| ||||||||||||||| ||||||||||||||||    
T  18525203 agtgtttatgtctgtagataagctcaaataagtcaattcaaaca 18525160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 26484251 - 26484211
Alignment:
Q  214 ataaacaacttaattaagcttttatcttataagtgcttatg 254  Q
    ||||||||||||||||| | |||||| ||||||||||||||    
T  26484251 ataaacaacttaattaatcatttatcatataagtgcttatg 26484211  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 44438804 - 44438760
Alignment:
Q  244 aagtgcttatgtatgtagataagctcaattaagtcaattcaaaca 288  Q
    ||||| |||||| ||||||||||||||| | ||||||||||||||    
T  44438804 aagtgattatgtctgtagataagctcaaatcagtcaattcaaaca 44438760  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 11059698 - 11059648
Alignment:
Q  238 tcttataagtgcttatgtatgtagataagctcaattaagtcaattcaaaca 288  Q
    ||||||||||||||||||   ||||||||||||  ||||||||||||||||    
T  11059698 tcttataagtgcttatgtcattagataagctcacataagtcaattcaaaca 11059648  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 256
Target Start/End: Complemental strand, 27890010 - 27889968
Alignment:
Q  214 ataaacaacttaattaagcttttatcttataagtgcttatgta 256  Q
    ||||||||||||||||||| |||||| ||| ||||||||||||    
T  27890010 ataaacaacttaattaagcatttatcatatgagtgcttatgta 27889968  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 286
Target Start/End: Original strand, 41057262 - 41057304
Alignment:
Q  244 aagtgcttatgtatgtagataagctcaattaagtcaattcaaa 286  Q
    ||||||||||| |||||||||||||||| |||| |||||||||    
T  41057262 aagtgcttatgcatgtagataagctcaaataagccaattcaaa 41057304  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 25185896 - 25185936
Alignment:
Q  214 ataaacaacttaattaagcttttatcttataagtgcttatg 254  Q
    ||||||||||||||||||  |||||| ||||||||||||||    
T  25185896 ataaacaacttaattaagtgtttatcatataagtgcttatg 25185936  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 6292599 - 6292644
Alignment:
Q  244 aagtgcttatgtatgtagataagctcaattaagtcaattcaaacaa 289  Q
    ||||||||||||  |||||||||||||| ||||||||| |||||||    
T  6292599 aagtgcttatgtcagtagataagctcaaataagtcaatccaaacaa 6292644  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 33961788 - 33961832
Alignment:
Q  242 ataagtgcttatgtatgtagataagctcaattaagtcaattcaaa 286  Q
    ||||||||||||||  |||||||||||||| ||| ||||||||||    
T  33961788 ataagtgcttatgtccgtagataagctcaaataattcaattcaaa 33961832  T

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