View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3151B-Insertion-13 (Length: 412)

Name: NF3151B-Insertion-13
Description: NF3151B
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3151B-Insertion-13
NF3151B-Insertion-13
[»] chr1 (1 HSPs)
chr1 (8-412)||(2602680-2603083)


Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 8 - 412
Target Start/End: Original strand, 2602680 - 2603083
Alignment:
Q  8 gcaaggtgagcatcatttagagggtgacagatctaagagtcaatgtaaatatgattattaaaacaaaatcataaggtcggcagacaactcagtttgtgag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2602680 gcaaggtgagcatcatttagagggtgacagatctaagagtcaatgtaaatatgattattaaaacaaaatcataaggtcggcagacaactcagtttgtgag 2602779  T
Q  108 ttgaggtctgaggaaaaccgaaagagctggtttagggttaaactttattgacttaacataactcgccaaattaatgtattaatatttgtatccatacaca 207  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2602780 ttgaggtctgaggaaaaccgaaagagctggtttagggttaaattttattgacttaacataactcgccaaattaatgtattaatatttgtatccatacaca 2602879  T
Q  208 aacnnnnnnntatacttggtttccttctattctaacctagtagtaataatttacattgaatgtatttcgtttccttgcacaagctaagtaagagcattta 307  Q
    |||       |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||     ||||||||||||    
T  2602880 aacaaaaaaatatacttggtttccttctattccaacctattagtaataatttacattgaatgtatttcgtttccttgcacaag-----taagagcattta 2602974  T
Q  308 ttttatcaagagaaagaagcaaaaacattttggatattattattccctcatgtttaaacagacatttacctcatccgtcccaaaaccaca----caggac 403  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||    
T  2602975 ttttatcaagaaaaagaagcaaaaacattttggatattattattccctcatgtttaaacagacatttacctcatccgtcccaaaaccacacacacaggac 2603074  T
Q  404 tgacaggag 412  Q
    |||||||||    
T  2603075 tgacaggag 2603083  T

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