View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3151B-Insertion-14 (Length: 389)
Name: NF3151B-Insertion-14
Description: NF3151B
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151B-Insertion-14 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 56 - 299
Target Start/End: Original strand, 46775149 - 46775392
Alignment:
| Q |
56 |
ttaatgaggcaaacacattatatcatctttatggtaatgaggttgctttgttgcgtaagctgctgcaacgtaattggcaggtgcatatatctcacatcta |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46775149 |
ttaatgaggcaaacacattatatcatctttatggtaatgaggttgctttgttgcgtaagctgctgcaacgtaattggcaggtgcatatatctcacatcta |
46775248 |
T |
|
| Q |
156 |
ccgcgaaggtaattcttgtgcggactggtttgcgaagacaggtgctagaaacaatgtcgacctcacagtttgtagaaacccccctacagatttaggcccc |
255 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46775249 |
ccgcgaaggtaattcttgtgcggactggtttgtgaagacgggtgctagaaacaatgtcgacctcacagtttgtagaaacccccctacagatttaggcccc |
46775348 |
T |
|
| Q |
256 |
tttttaattgctgatgctaatggtactcagtttgtgagacctta |
299 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46775349 |
tttttaattgctgatgctaatggtactcggtttgtgagacctta |
46775392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 297
Target Start/End: Complemental strand, 45745122 - 45744951
Alignment:
| Q |
126 |
taattggcaggtgcatatatctcacatctaccgcgaaggtaattcttgtgcggactggtttgcgaagacaggtgctagaaacaatgtcgacctcacagtt |
225 |
Q |
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|||||| |||||||||||||||||||| || | ||| |||||||||||||||||| |||| |||| |||||||||||||||| || | ||| || |
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| T |
45745122 |
taattgacaggtgcatatatctcacatttatggtgaatgtaattcttgtgcggactaatttgtgaagctgaatgctagaaacaatgtctacttaacaatt |
45745023 |
T |
|
| Q |
226 |
tgtagaaacccccctacagatttagg-cccctttttaattgctgatgctaatggtactcagtttgtgagacct |
297 |
Q |
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| T |
45745022 |
tgtag-aagtctcctatgaatttaggtcccctttttaaccgctgatgttaatggtactcggtttgtgagacct |
45744951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 61 - 299
Target Start/End: Original strand, 24082491 - 24082729
Alignment:
| Q |
61 |
gaggcaaacacattatatcatctttatggtaatgaggttgctttgttgcgtaagctgctgcaacgtaattggcaggtgcatatatctcacatctaccgcg |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24082491 |
gaggcaaacacattatatcatctttatggtaatgaggttgttttgttgcgtaagctgctgcaacgtaattggcaggtgcatatatctcacatctaccgcg |
24082590 |
T |
|
| Q |
161 |
aaggtaattcttgtgcggactggtttgcgaagacaggtgctagaaacaatgtcgacctcacagtttgtagaaacccccctacagatttaggccccttttt |
260 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24082591 |
aaggtaattcttgtgcggactggtttgcaaagacgggtgctagaaacaatgccgacctcacagtttgtagaaacccccctacagatttaggccccctttt |
24082690 |
T |
|
| Q |
261 |
aattgctgatgctaatggtactcagtttgtgagacctta |
299 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| |
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| T |
24082691 |
aattgctgatgctaatggtactcggtttgtgagacctta |
24082729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 116 - 300
Target Start/End: Original strand, 31180076 - 31180259
Alignment:
| Q |
116 |
tgctgcaacgtaattggcaggtgcatatatctcacatctaccgcgaaggtaattcttgtgcggactggtttgcgaagacaggtgctagaaacaatgtcga |
215 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
31180076 |
tgctacaacgtaattggcaggtgcatatatcttacatctactgcgaaggtaattcttgtgcggactagtttgcgaagacgggtgctagaaacaatgtcga |
31180175 |
T |
|
| Q |
216 |
cctcacagtttgtagaaacccccctacagatttaggcccctttttaattgctgatgctaatggtactcagtttgtgagaccttaa |
300 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31180176 |
cctcacagtttgtagaaa-ccccctacagatttaggcccctttttaattgctgatgctaatggtactcggtttgtgagaccttaa |
31180259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 31179557 - 31179495
Alignment:
| Q |
56 |
ttaatgaggcaaacacattatatcatctttatggtaatgaggttgctttgttgcgtaagctgc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31179557 |
ttaatgaggcaaacacattatatcatctttatggtaatgaggttgctttgttgcgtaagctgc |
31179495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 56 - 290
Target Start/End: Complemental strand, 9405729 - 9405495
Alignment:
| Q |
56 |
ttaatgaggcaaacacattatatcatctttatggtaatgaggttgctttgttgcgtaagctgctgcaacgtaattggcaggtgcatatatctcacatcta |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9405729 |
ttaatgaggcaaacacattatatcatctttatggtaatgaggttgctttgttgcgtaagctgctgcaacgtaattggcaggtgcatatatctcacatcta |
9405630 |
T |
|
| Q |
156 |
ccgcgaaggtaattcttgtgcggactggtttgcgaagacaggtgctagaaacaatgtcgacctcacagtttgtagaaacccccctacagatttaggcccc |
255 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||| |
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| T |
9405629 |
ccgcgaaggtaattcttgtgcgaactggtttgcgaagacgggtgctagaaacaatgtcgacttcgcagtttgtagaaacccccttacagatttaggcccc |
9405530 |
T |
|
| Q |
256 |
tttttaattgctgatgctaatggtactcagtttgt |
290 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| |
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|
| T |
9405529 |
cttttaattgatgatgctaatggtactcggtttgt |
9405495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 110 - 295
Target Start/End: Complemental strand, 31374405 - 31374218
Alignment:
| Q |
110 |
gtaagctgctgcaacgtaat---tggcaggtgcatatatctcacatctaccgcgaaggtaattcttgtgcggactggtttgcgaagacaggtgctagaaa |
206 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| |
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| T |
31374405 |
gtaagctgctgcaacgtaataattggcaggtacatatatctcaaatctaccgcgaaggtaatttttgtacggactggtttgcgaagacgggtgctagaaa |
31374306 |
T |
|
| Q |
207 |
caatgtcgacctcacagtttgtagaaacccccctacagatttaggcccctttttaattgctgatgctaatggtactcagtttgtgagac |
295 |
Q |
| |
|
|||||||| || ||||||| ||||||| |||||||||||||||||||| ||||||||| |||| |||||||||||| |||||||||| |
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|
| T |
31374305 |
caatgtcggtcttacagtttatagaaac-cccctacagatttaggcccccttttaattgttgatactaatggtactcgatttgtgagac |
31374218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 109 - 299
Target Start/End: Complemental strand, 14261934 - 14261745
Alignment:
| Q |
109 |
cgtaagctgctgcaacgtaattggcaggtgcatatatctcacatctaccgcgaaggtaattcttgtgcggactggtttgcgaagacaggtgctagaaaca |
208 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||| || | |||||||||||| ||||||| ||| | |
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|
| T |
14261934 |
cgtaagctactgcaacgtaattggcaggtgcatgtatctcacatctattccgaagataattcttgtgcagagtagtttgcgaagacgggtgctaaaaata |
14261835 |
T |
|
| Q |
209 |
atgtcgacctcacagtttgtagaaacccccctacagatttaggcccctttttaattgctgatgctaatggtactcagtttgtgagacctta |
299 |
Q |
| |
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|||||||| | ||||||||||||||| |||||||||||||| |||| ||||||||||||||| |||||||| || ||||||||| ||||| |
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|
| T |
14261834 |
atgtcgactttacagtttgtagaaac-cccctacagatttaaacccccttttaattgctgatgttaatggtattcggtttgtgaggcctta |
14261745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 29555453 - 29555397
Alignment:
| Q |
227 |
gtagaaacccccctacagatttaggcccctttttaattgctgatgctaatggtactc |
283 |
Q |
| |
|
|||||||||||| ||| |||||| | ||||||||||| ||||||| ||||||||||| |
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|
| T |
29555453 |
gtagaaacccccttacggatttaagtccctttttaatcgctgatgttaatggtactc |
29555397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 151 - 279
Target Start/End: Complemental strand, 17305683 - 17305557
Alignment:
| Q |
151 |
atctaccgcgaaggtaattcttgtgcggactggtttgcgaagacaggtgctagaaacaatgtcgacctcacagtttgtagaaacccccctacagatttag |
250 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||||||||||| ||||| ||||||||| |
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|
| T |
17305683 |
atctaccgcgaagataattcttgtgcggactggtttgcaaagacgggtactagaaacaatgtcgacttcacagtttgtagaaa--cccctccagatttag |
17305586 |
T |
|
| Q |
251 |
gcccctttttaattgctgatgctaatggt |
279 |
Q |
| |
|
| ||| ||||||||| |||| ||||||| |
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|
| T |
17305585 |
gaccccttttaattgttgattgtaatggt |
17305557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 58 - 174
Target Start/End: Original strand, 38416688 - 38416804
Alignment:
| Q |
58 |
aatgaggcaaacacattatatcatctttatggtaatgaggttgctttgttgcgtaagctgctgcaacgtaattggcaggtgcatatatctcacatctacc |
157 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||||||||| | | || ||||||||||| | |||||||||||||||||||||| |
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|
| T |
38416688 |
aatgaggcaaacacattatatcatttatatggtaatgaggttgctttgttgcatgaactagtgcaacgtaatatgaaggtgcatatatctcacatctatg |
38416787 |
T |
|
| Q |
158 |
gcgaaggtaattcttgt |
174 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
38416788 |
gcgaaggtaattcttgt |
38416804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 41332924 - 41332876
Alignment:
| Q |
8 |
ctcaagtgtgtaatcatgtaagtgtttgtaacaatgacaataacatatt |
56 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41332924 |
ctcaagtgtgtaatcatgtaagtgtttgtaacaatgacaataacatatt |
41332876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 389
Target Start/End: Complemental strand, 41332890 - 41332845
Alignment:
| Q |
344 |
tgacaataacatattaaatcgtttatttcatattataaatagtgag |
389 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
41332890 |
tgacaataacatattaaatcttttatttgatattataaatagtgag |
41332845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 26853375 - 26853314
Alignment:
| Q |
190 |
aagacaggtgctagaaacaatgtcgacctcacagtttgtagaaacccccctacagatttagg |
251 |
Q |
| |
|
||||||| |||||||||||| ||| || | |||||||||||||||| ||||||| ||||||| |
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|
| T |
26853375 |
aagacagttgctagaaacaacgtcaacttgacagtttgtagaaacctccctacatatttagg |
26853314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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