View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151B-Insertion-17 (Length: 311)
Name: NF3151B-Insertion-17
Description: NF3151B
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151B-Insertion-17 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 6240816 - 6240598
Alignment:
| Q |
8 |
attaatgcttctaatattcttccatctaacttttaagataaaaatgcttctattatctactacatagtgctcatcaccatcccactctcaatttttaggc |
107 |
Q |
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| T |
6240816 |
attaatgcttctaatattcttccatctaacttttaagataaaaatgcttctattgtctactacatagtgctcatcaccatcccactctcaatttttaggc |
6240717 |
T |
|
| Q |
108 |
caaatatctcctagtgttcttgaaagtttacacttagttataaatatttacttgcatactttgagatcaatgacaacctatgcataatcatgcttcttaa |
207 |
Q |
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||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6240716 |
caaatatctcctagtgttctttaaagtttaaacttggttataaatatttacttgcatactttgagatcaatgacaacctatggataatcatgcttcttaa |
6240617 |
T |
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| Q |
208 |
ttggacaaatatgccgatc |
226 |
Q |
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||||||||||||||||||| |
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| T |
6240616 |
ttggacaaatatgccgatc |
6240598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 6211861 - 6211659
Alignment:
| Q |
27 |
ttccatctaacttttaagataaaaatgcttctattatctactacatagtgctcatcaccatcccactctcaatttttaggccaaatatctcctagtgttc |
126 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6211861 |
ttccatctaacttctaagataaaaatgcttctattatctactacatagtgctcatcgccatcccactctcaatttttaggccaaatacctcctagtgttg |
6211762 |
T |
|
| Q |
127 |
ttgaaagtttacacttagttataaatatttacttgcatactttgagatcaatgacaacctatgcataatcatgcttcttaattggacaaatatgccgatc |
226 |
Q |
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| T |
6211761 |
tttaaagtttacacttagttataaatatttacttgcatactttgagatcaatgataacctatgcataatcatgcttcttaattggacaaatatgccgatc |
6211662 |
T |
|
| Q |
227 |
ttc |
229 |
Q |
| |
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||| |
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| T |
6211661 |
ttc |
6211659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 6211637 - 6211554
Alignment:
| Q |
228 |
tctagttgtccctcagttggacattttatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttccctca |
311 |
Q |
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||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6211637 |
tctagttgtcccttagttggacagtgtatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttctctca |
6211554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 6240573 - 6240490
Alignment:
| Q |
228 |
tctagttgtccctcagttggacattttatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttccctca |
311 |
Q |
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|||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6240573 |
tctagttgtccctcagtttgacaatgtatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttctctca |
6240490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 19115830 - 19115992
Alignment:
| Q |
8 |
attaatgcttctaatattcttccatctaacttttaagataaaaatgcttctattatctactacatagtgctcatcaccatcccactctcaatttttaggc |
107 |
Q |
| |
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||||||||||||||||||| || |||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
19115830 |
attaatgcttctaatattcacccttctaacttttgagatgaaaatgcttctattatctactgcatagtgctcatcaccatcccactctcaatttttaggc |
19115929 |
T |
|
| Q |
108 |
caaa-tatctcctagtgttcttgaaagtttacacttagttataaatatttacttgcatacttt |
169 |
Q |
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|||| || |||||| ||||| || ||| ||||||| |||||||||||||||| |||||| |
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| T |
19115930 |
caaattacctcctatgattctttaagttttgcacttaggaataaatatttacttgcgtacttt |
19115992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 23427927 - 23427999
Alignment:
| Q |
230 |
tagttgtccctcagttggacattttatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaat |
302 |
Q |
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||||||| ||||| | ||||| | ||||| ||||||||||| || |||||||||||||||| | ||||||||| |
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| T |
23427927 |
tagttgttcctcaatgggacaatgtatgaccttaagcatttatttattcacttgttctctgataaagtgaaat |
23427999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 19610155 - 19609982
Alignment:
| Q |
16 |
ttctaatattcttccatctaacttttaagataaaaatgcttctattatctactacatagtgct---catcaccatcccactctcaatttttaggccaaat |
112 |
Q |
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||||||||||| | |||||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||||||||| ||| |
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| T |
19610155 |
ttctaatattccctcttctaacttttgagataaaaatgcttctattatctactgcatagtgctcaacatcatcatcccaatctcaatttttaggcctaat |
19610056 |
T |
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| Q |
113 |
atctcctagtgttcttgaaagtttacacttagttataaatatttacttgcatactttgagatcaatgacaaccta |
187 |
Q |
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| ||| ||| ||| || || |||||||||||||||||||||||||||||||||||| | || ||||||||||| |
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| T |
19610055 |
acctcttag-gttttttaagttttacacttagttataaatatttacttgcatacttttaaattgatgacaaccta |
19609982 |
T |
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