View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151B-Insertion-2 (Length: 479)
Name: NF3151B-Insertion-2
Description: NF3151B
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151B-Insertion-2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 8 - 479
Target Start/End: Original strand, 38005596 - 38006067
Alignment:
| Q |
8 |
gtaaaacaactcgaatgcaatgctgacgattcgagctcttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaacaactatgtttaga |
107 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38005596 |
gtaaaacaactcaaatgcaatgccgacgattcgagctcttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaacaacgatgtttaga |
38005695 |
T |
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| Q |
108 |
tcagtcgcactgtttttatttactactgctttagattcatgatacacgctagggtgtgacatatcagggatagtaactgtaacagcttcaccggcgcgtg |
207 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38005696 |
tcagtcgcaccgtttttatttactactgctttgaattcatgatacacgctagggtgtgacatatcagggatagtaactgtaacagcttcaccggcgcgtg |
38005795 |
T |
|
| Q |
208 |
agtttgtttcatgcgcgtagagtgctaaaagaacggcttcaaacccggcttgcggttttctatccgcgactcgtgagagataaactccggcgattatagg |
307 |
Q |
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| T |
38005796 |
agtttgtttcatgcgcgtatagtgctaaaagaacggcttcaaacccggcttgcggttttctatccgcgactcgtgagagataaactccggcgattatagg |
38005895 |
T |
|
| Q |
308 |
taggaaacgggggacggtgagctggagatcaccgacattggattggaaagtgtcatagagccaacgacaaagattgttgtcgccagcaccggagctgggt |
407 |
Q |
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| T |
38005896 |
taggaaacggaggacggtgagctggagatcaccgacattggattggaaagtgtcatagagccaacgacaaagattgttgtcgccagcaccggagctgggt |
38005995 |
T |
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| Q |
408 |
tggcggaggagggtggcgatttggttgtagattttgagttcgttgaggatagagagaggggtggttgatgat |
479 |
Q |
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| T |
38005996 |
tggcggaggagggtggcgatttggttgtagattttgagttcgttgaggatagagagaggggtggttgatgat |
38006067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 478
Target Start/End: Complemental strand, 26462217 - 26461747
Alignment:
| Q |
8 |
gtaaaacaactcgaatgcaatgctgacgattcgagctcttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaacaactatgtttaga |
107 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
26462217 |
gtaaaacaactcgaatgcaatgcctacgattcgagctcttcgtgttgaccgaacagtgccgtgtggctcaagcgaaggcgataaaacaacgatgtttaga |
26462118 |
T |
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| Q |
108 |
tcagtcgcactgtttttatttactactgctttagattcatgatacacgctagggtgtgacatatcagggatagtaactgtaacagcttcaccggcgcgtg |
207 |
Q |
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||||| |||||||||||||| |||| |||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||| |||||||| ||||||| |
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| T |
26462117 |
tcagttgcactgtttttattgtttactactttggattcatgatacacgctagggtgtgtcatgtcagggatagtaatggtaacggcttcaccagcgcgtg |
26462018 |
T |
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| Q |
208 |
agtttgtttcatgcgcgtagagtgctaaaagaacggcttcaaacccggcttgcggttttctatccgcgactcgtgagagataaactccggcgattatagg |
307 |
Q |
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| T |
26462017 |
acgttgtttcatgcgcgtagagagctaaaagaacagcttcaaacccggcttgcggttttctatcagcgacgcgtgagaggtaaacaccggcgataatcgg |
26461918 |
T |
|
| Q |
308 |
taggaaacgggggacggtgagctggagatcaccgacattggattggaaagtgtcatagagccaacgacaaagattgttgtcgccagcaccggagctgggt |
407 |
Q |
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|||||||| |||||||||| ||||||||| || ||| |||||||||||||| |||||||||||||||||||||||||| || || |||||| ||||| |
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| T |
26461917 |
gaggaaacgtaggacggtgagttggagatcagtgatatttgattggaaagtgtcgtagagccaacgacaaagattgttgtcaccggcgccggagttgggt |
26461818 |
T |
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| Q |
408 |
tggcggaggagggtggcgatttggttgtagattttgagttcgttgaggatagagagaggggtggttgatga |
478 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
26461817 |
tggcggaggagggtggcgatttggttgtagatttcgggttcgttgaggatagagagaggggtggttgatga |
26461747 |
T |
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