View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151B-Insertion-23 (Length: 286)
Name: NF3151B-Insertion-23
Description: NF3151B
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151B-Insertion-23 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 6 - 277
Target Start/End: Complemental strand, 4196306 - 4196035
Alignment:
| Q |
6 |
caaattacatcgtggaagacgcggaaacaaatgatgctcaatctgaaactgcaaaccaccatgaaaccaatccatccaagaagaacacttcacatcgaga |
105 |
Q |
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| T |
4196306 |
caaattacatcgtggaagacgcggaaacaaatgatgctcaatctgaaactgcaaaccaccatgaaaccaatccatccaagaagaacacttcacatcaaga |
4196207 |
T |
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| Q |
106 |
gttccatgagcttgcttctcaaaccaatcatgagccgtcggtggaccaacataaacactagccgaaaaatgattcaaagtaaactgaacatgttgaatcc |
205 |
Q |
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| T |
4196206 |
gttccatgagcttgcttctcaaaccaatcatgagccgtcggtggaccaacataaacactagccgaaaaatgattcaaagtaaactgaacatgttgaatcc |
4196107 |
T |
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| Q |
206 |
cagtcacacaaaaactagcaagcacaaataaaaccctctcaccccaattaggtaaacaagaaaccaacaaag |
277 |
Q |
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| T |
4196106 |
cagtcacacaaaaactagcaagcacaaataaaaccctctcaccccaattaggtaaacaagaaaccaacaaag |
4196035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 117 - 277
Target Start/End: Complemental strand, 4187163 - 4187003
Alignment:
| Q |
117 |
ttgcttctcaaaccaatcatgagccgtcggtggaccaacataaacactagccgaaaaatgattcaaagtaaactgaacatgttgaatcccagtcacacaa |
216 |
Q |
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| T |
4187163 |
ttgcttctcaaaccaatcatgcgatgttggttgaccaatatagacacttgcagaaaaatgattgaaagtgaactgaacatgttgaataccagtcacagaa |
4187064 |
T |
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| Q |
217 |
aaactagcaagcacaaataaaaccctctcaccccaattaggtaaacaagaaaccaacaaag |
277 |
Q |
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| T |
4187063 |
aaactagcaattacaaacaaaactctctcaccccaattaggtaaacaagaaaccaacaaag |
4187003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 24416839 - 24416894
Alignment:
| Q |
28 |
ggaaacaaatgatgctcaatctgaaactgcaaaccaccatgaaaccaatccatcca |
83 |
Q |
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| T |
24416839 |
ggaaacaaatgatgttcaagctgaaactgcaaaccaccaaagaaccaatccatcca |
24416894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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