View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151B-Insertion-24 (Length: 150)
Name: NF3151B-Insertion-24
Description: NF3151B
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151B-Insertion-24 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 3e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 18090382 - 18090238
Alignment:
| Q |
5 |
acataaagtgataaacctgactctacctctttcaaatgaataaaaaagataaattgtaaagagagaaacaaatcatacatgcaaaataaaccttgaacta |
104 |
Q |
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| T |
18090382 |
acataaagtgataaacctgactctacctctttcaaatgaataaaaaagataaattgtaaagagaaaaacaaatcatacatgcaaaataaaccttgaacta |
18090283 |
T |
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| Q |
105 |
cgtgatcgttatactcatgtttatcctcacctcttcatacttctc |
149 |
Q |
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| T |
18090282 |
cgtgatcgttatactcatgtttatcctcacctcttcatacttctc |
18090238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 7e-35
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 18082732 - 18082597
Alignment:
| Q |
13 |
tgataaacctgactctacctctttcaaatgaat-aaaaaagataaattgtaaagagagaaacaaatcatacatgcaaaataaaccttgaactacgtgatc |
111 |
Q |
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| T |
18082732 |
tgataaacctgtctctacctctttcaaatgaatcaaaaaataaaaattgtaaagagaaaaacaaataatacatataaaataaaccttgaactacgtga-- |
18082635 |
T |
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| Q |
112 |
gttatactcatgtttatcctcacctcttcatacttctc |
149 |
Q |
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| T |
18082634 |
gtttttctcatgtttatcctcaccgcctcatacttctc |
18082597 |
T |
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