View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3151B-Insertion-3 (Length: 896)

Name: NF3151B-Insertion-3
Description: NF3151B
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3151B-Insertion-3
NF3151B-Insertion-3
[»] chr2 (2 HSPs)
chr2 (499-613)||(10311885-10311999)
chr2 (55-223)||(10311432-10311600)
[»] chr8 (2 HSPs)
chr8 (78-159)||(38435880-38435961)
chr8 (498-607)||(38436224-38436333)
[»] chr6 (1 HSPs)
chr6 (77-139)||(11191709-11191771)


Alignment Details
Target: chr2 (Bit Score: 95; Significance: 5e-46; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 499 - 613
Target Start/End: Original strand, 10311885 - 10311999
Alignment:
Q  499 atacctggtcatggtacttgtcaccaatgatgacaaacatggacatatgccttgttttgacaccattttcaatgagagttctgattcgctcatccacctt 598  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  10311885 atacctggtcatagtacttgtcaccaatgatgacaaacatggacctatgccttgttttaacgccattctcaatgagagttctgattcgctcatccacctt 10311984  T
Q  599 cttcctcatatctct 613  Q
    |||||||||||||||    
T  10311985 cttcctcatatctct 10311999  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 55 - 223
Target Start/End: Original strand, 10311432 - 10311600
Alignment:
Q  55 gacatatttatcaattatataccgcttgtccttgtaacaccataaaacagttggactggatttgatttgtgccttgctaagcatgtgatgaagatttacg 154  Q
    |||| ||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||| ||||||||||||     
T  10311432 gacagattcatcaattacataccgcttgtccttgtaacaccataaaacagttgggctggatttgatctgtgcctggctaagcatgtaatgaagatttaca 10311531  T
Q  155 atctgtacacgatagaaattgcagttagtactcaaattgttctagccttaaacaaagtttacaaaatgt 223  Q
    ||||| ||    |||||| | || |||||||||||||||| ||| |||||||   ||||| ||||||||    
T  10311532 atctgcacgtagtagaaacttcacttagtactcaaattgtgctaaccttaaatggagtttccaaaatgt 10311600  T

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Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 38435880 - 38435961
Alignment:
Q  78 gcttgtccttgtaacaccataaaacagttggactggatttgatttgtgccttgctaagcatgtgatgaagatttacgatctg 159  Q
    |||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| | ||||||||| || |||||    
T  38435880 gcttttccttataacaccataaaacagttggcctggatttgatttgagccttgctaagcatataatgaagattaacaatctg 38435961  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 498 - 607
Target Start/End: Original strand, 38436224 - 38436333
Alignment:
Q  498 gatacctggtcatggtacttgtcaccaatgatgacaaacatggacatatgccttgttttgacaccattttcaatgagagttctgattcgctcatccacct 597  Q
    |||||||| ||| || | |||||||| || ||||||||||||||   |||||||| |||||| |||||||| || ||||||||||| || ||||||||||    
T  38436224 gatacctgatcacgggatttgtcaccgataatgacaaacatggatcgatgccttgatttgacgccattttcgataagagttctgatacgttcatccacct 38436323  T
Q  598 tcttcctcat 607  Q
    ||||||||||    
T  38436324 tcttcctcat 38436333  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 11191771 - 11191709
Alignment:
Q  77 cgcttgtccttgtaacaccataaaacagttggactggatttgatttgtgccttgctaagcatg 139  Q
    ||||||||||||||||||||| ||||| || |||| |||||||| ||||  | ||||||||||    
T  11191771 cgcttgtccttgtaacaccattaaacacttagactagatttgatatgtgtttggctaagcatg 11191709  T

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