View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151B-Insertion-6 (Length: 585)
Name: NF3151B-Insertion-6
Description: NF3151B
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151B-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 6 - 562
Target Start/End: Complemental strand, 30874414 - 30873859
Alignment:
| Q |
6 |
cactatgaacacattggaatgcagtctctactctctcccttgaatgttatcacggcgcatcatccaaagcaattaataggccatgttatttaactgttca |
105 |
Q |
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| T |
30874414 |
cactatgaacacattggaatgcagtctctactctctcccttgaatgttatcacggtgcatcatccaaagcaattaataggccatgttatctaactgttca |
30874315 |
T |
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| Q |
106 |
ttttgattttgaaagagattaggcaatttgcattaaattatcatagccatatcatcaacatttgcgttgtttagactctcacaatgtggcaaactaaggt |
205 |
Q |
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| T |
30874314 |
ttttgattttgaaagagagtaggcaatttgcattaaattatcatagccatatcatcaacatttgcgttgtttagactctcacaatgtggcaaactaaggt |
30874215 |
T |
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| Q |
206 |
tcaaattctgactgaaagaggtatctacatttagtgtctgacacactttgaatatgattacatgtgatagaaggaatctgttggaaacc-nnnnnnntta |
304 |
Q |
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| T |
30874214 |
tcaaattctgattaaaagaggtatctacatttagtgtttgacacactttgaatatgattacatgcgatagaaggaatctgttggaaaccaaaaaaaaata |
30874115 |
T |
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| Q |
305 |
acatttgcattgaactttgcatacag-taattataacatgtaatattaaattgataactgtgatcaaattcaatacttt-atagccgagttgcaaaatta |
402 |
Q |
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| T |
30874114 |
acatttgcattaaactttgcatacagttaattataagatgtaatattaaattgataactgtgatcaaattcaatactttgatagccgagttgcaaaatta |
30874015 |
T |
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| Q |
403 |
gattatacttggcttttattattaagatattatttatatactacattttagagttcatcatgcccttgactccctaattgtttcaccttgtgtttgtcct |
502 |
Q |
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| T |
30874014 |
gattatacttagcttttattattaagatattatttatatac----atttagagttcatcatgcccttgactcactaattgtttcaccttgtgtttgtcct |
30873919 |
T |
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| Q |
503 |
tgtatattataaggtgagttggttgtggactgttttgtttatttcggttaattgttatga |
562 |
Q |
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| T |
30873918 |
tgtatattataaggtgagttggttgtggactgttttgtttatttcggttaattgttatga |
30873859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 176 - 266
Target Start/End: Original strand, 26323182 - 26323272
Alignment:
| Q |
176 |
ttagactctcacaatgtggcaaactaaggttcaaattctgactgaaagaggtatctacatttagtgtctgacacactttgaatatgattac |
266 |
Q |
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| T |
26323182 |
ttagactctcacaatgtggcgaaccaaagtttaaattccggttgaaagaggtgtctacatttaatgtctgatacgctttgaataagattac |
26323272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 266
Target Start/End: Complemental strand, 11668813 - 11668751
Alignment:
| Q |
204 |
gttcaaattctgactgaaagaggtatctacatttagtgtctgacacactttgaatatgattac |
266 |
Q |
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| T |
11668813 |
gttcaaattctggttggaagaggtatccacatttagtgtccaacacacttcgaataggattac |
11668751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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