View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3151B-Insertion-8 (Length: 511)
Name: NF3151B-Insertion-8
Description: NF3151B
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151B-Insertion-8 |
 | |
|
| [»] scaffold0635 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0635 (Bit Score: 125; Significance: 4e-64; HSPs: 3)
Name: scaffold0635
Description:
Target: scaffold0635; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 191 - 440
Target Start/End: Complemental strand, 763 - 515
Alignment:
| Q |
191 |
ttgtttatttctgtgcctttttaaattctaatgatgccaagaagataagcttaccataagtaatttcccaatttgatacaattcgttaatgagctacaat |
290 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||||||||||||||||||||| ||| |||||||| || |||||||||||||| ||||||| ||||||| |
|
|
| T |
763 |
ttgtttatttctatgactttt-aaattctaatgatgccaagaagataagcttgccacaagtaattaccagatttgatacaattcattaatgaactacaat |
665 |
T |
|
| Q |
291 |
aaaaaataaattgtttgggatcaataatctgaatttcaatcctagttaacacaattcttgnnnnnnnnnnnnnnnnnnnnnnnggaaaaagcttaacaca |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
664 |
aaaaaataaattgtttgggatcaataatctgaatttcaatcctagttaacacaattcttgttttttatcctttttcttttttttgaaaaagcttaacaca |
565 |
T |
|
| Q |
391 |
gatcttgttgaaagcttatttatttttaaatcaagctccaaactatcaaa |
440 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
564 |
gatcttgttgaaagcttatttattttttaatcaaactccaaactatcaaa |
515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0635; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 971 - 798
Alignment:
| Q |
8 |
aaagtgtcactttttgcaaggagactactgaaaaataggcttccaagaaaagataacttaactagacctaaagttcttcatctaggacctctcttctgtt |
107 |
Q |
| |
|
|||||||||||||||||| ||| || ||||| ||||||||| | | |||| ||||||||| ||||| | ||||||||| |||| |||| | |||| |
|
|
| T |
971 |
aaagtgtcactttttgcatggacaccactgataaataggct-cggacaaaatataacttaattagacgtggagttcttcaattaggttctctttaatgtt |
873 |
T |
|
| Q |
108 |
cgggtgattgtggtatgaaggaattagtgaaatgtcaaattctattaagaaatgggaaggatatctaaacagctca |
183 |
Q |
| |
|
| | | |||| |||||||||||| | ||| |||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
872 |
ccgtag-ttgtagtatgaaggaataaatgagatgtcaaattctattatgaaatggtgtggatatctaaacagctca |
798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0635; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 511
Target Start/End: Complemental strand, 418 - 379
Alignment:
| Q |
472 |
atgtcacatgggaggcgatagacttttattaagcatatga |
511 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
418 |
atgtcacatgggaggcgatagacttttaataagcatatga |
379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 4e-64; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 191 - 440
Target Start/End: Original strand, 10108021 - 10108269
Alignment:
| Q |
191 |
ttgtttatttctgtgcctttttaaattctaatgatgccaagaagataagcttaccataagtaatttcccaatttgatacaattcgttaatgagctacaat |
290 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||||||||||||||||||||| ||| |||||||| || |||||||||||||| ||||||| ||||||| |
|
|
| T |
10108021 |
ttgtttatttctatgactttt-aaattctaatgatgccaagaagataagcttgccacaagtaattaccagatttgatacaattcattaatgaactacaat |
10108119 |
T |
|
| Q |
291 |
aaaaaataaattgtttgggatcaataatctgaatttcaatcctagttaacacaattcttgnnnnnnnnnnnnnnnnnnnnnnnggaaaaagcttaacaca |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10108120 |
aaaaaataaattgtttgggatcaataatctgaatttcaatcctagttaacacaattcttgttttttatcctttttcttttttttgaaaaagcttaacaca |
10108219 |
T |
|
| Q |
391 |
gatcttgttgaaagcttatttatttttaaatcaagctccaaactatcaaa |
440 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
10108220 |
gatcttgttgaaagcttatttattttttaatcaaactccaaactatcaaa |
10108269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 10044128 - 10044193
Alignment:
| Q |
375 |
gaaaaagcttaacacagatcttgttgaaagcttatttatttttaaatcaagctccaaactatcaaa |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10044128 |
gaaaaagcttaacacagatcttgttgaaagcttatttatttttaaatcaaactccaaactatcaaa |
10044193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 10044058 - 10044104
Alignment:
| Q |
304 |
tttgggatcaataatctgaatttcaatcctagttaacacaattcttg |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10044058 |
tttgggatcaataatctgaatttcaatcctagttaacacaattcttg |
10044104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 10107813 - 10107986
Alignment:
| Q |
8 |
aaagtgtcactttttgcaaggagactactgaaaaataggcttccaagaaaagataacttaactagacctaaagttcttcatctaggacctctcttctgtt |
107 |
Q |
| |
|
|||||||||||||||||| ||| || ||||| ||||||||| | | |||| ||||||||| ||||| | ||||||||| |||| |||| | |||| |
|
|
| T |
10107813 |
aaagtgtcactttttgcatggacaccactgataaataggct-cggacaaaatataacttaattagacgtggagttcttcaattaggttctctttaatgtt |
10107911 |
T |
|
| Q |
108 |
cgggtgattgtggtatgaaggaattagtgaaatgtcaaattctattaagaaatgggaaggatatctaaacagctca |
183 |
Q |
| |
|
| | | |||| |||||||||||| | ||| |||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
10107912 |
ccgtag-ttgtagtatgaaggaataaatgagatgtcaaattctattatgaaatggtgtggatatctaaacagctca |
10107986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 511
Target Start/End: Original strand, 10044290 - 10044329
Alignment:
| Q |
472 |
atgtcacatgggaggcgatagacttttattaagcatatga |
511 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10044290 |
atgtcacatgggaggcgatagacttttaataagcatatga |
10044329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 511
Target Start/End: Original strand, 10108366 - 10108405
Alignment:
| Q |
472 |
atgtcacatgggaggcgatagacttttattaagcatatga |
511 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10108366 |
atgtcacatgggaggcgatagacttttaataagcatatga |
10108405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University