View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_1D_high_16 (Length: 257)
Name: NF3151_1D_high_16
Description: NF3151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_1D_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 92 - 241
Target Start/End: Original strand, 8358848 - 8358997
Alignment:
| Q |
92 |
ttagtgtgaatcagttgaaacatgtataatgcaatgaaaattaaatattttgtcgtataaccgtacttatgtaaacctattttcaaggttaattaatctg |
191 |
Q |
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| T |
8358848 |
ttagtgtgaatcagttgaaacatgtataatgcaatgaaaattaaatattttgtcgtataaccgtacttatgtaaacctattttcaaggttaattaatctg |
8358947 |
T |
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| Q |
192 |
taatattctataagacctcataaccaccaaaggaaaatatggtcccttga |
241 |
Q |
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| T |
8358948 |
taatattctataagacctcataaccaccaaaggaaaatatggtcccttga |
8358997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 8358715 - 8358801
Alignment:
| Q |
21 |
ccatcatgagtacatagttgatgatagcacataagtatttaatcttattgtgaaattaaagataagcattcttagtgtgaatcagtt |
107 |
Q |
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| T |
8358715 |
ccatcatgagtacatagttgatgatagcacataagtatttaatcttattgtgaaattaaagataagcattcttagtgtgaatcagtt |
8358801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 8368004 - 8368050
Alignment:
| Q |
23 |
atcatgagtacatagttgatgatagcacataagtatttaatcttatt |
69 |
Q |
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| T |
8368004 |
atcatgagtacatagttgatgatggcacataagtatttgatcttatt |
8368050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 8236480 - 8236517
Alignment:
| Q |
23 |
atcatgagtacatagttgatgatagcacataagtattt |
60 |
Q |
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| T |
8236480 |
atcatgactacatagttgatgatagcacataagtattt |
8236517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 8379341 - 8379382
Alignment:
| Q |
23 |
atcatgagtacatagttgatgatagcacataagtatttaatc |
64 |
Q |
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| T |
8379341 |
atcatgattacatagttgatgttagcacataagtatttaatc |
8379382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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