View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3151_1D_high_19 (Length: 212)

Name: NF3151_1D_high_19
Description: NF3151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3151_1D_high_19
NF3151_1D_high_19
[»] chr1 (1 HSPs)
chr1 (13-205)||(33987702-33987896)
[»] chr2 (13 HSPs)
chr2 (23-205)||(8988097-8988276)
chr2 (23-201)||(9026436-9026615)
chr2 (27-201)||(9031707-9031882)
chr2 (23-205)||(9020506-9020688)
chr2 (84-205)||(9023133-9023254)
chr2 (88-205)||(8991882-8992001)
chr2 (87-202)||(8973044-8973161)
chr2 (122-201)||(9030166-9030246)
chr2 (17-79)||(8996024-8996087)
chr2 (131-205)||(8975440-8975514)
chr2 (112-205)||(8996098-8996184)
chr2 (120-205)||(9016238-9016323)
chr2 (13-45)||(8975361-8975393)
[»] chr5 (1 HSPs)
chr5 (25-79)||(3643110-3643164)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 33987702 - 33987896
Alignment:
Q  13 attctaacagacac--acaactgtggcactcaaaacaaatgaatgaacacaaagatgaaagatataatagcgttagccggttagcccatcaacaaaagca 110  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||    
T  33987702 attctaacagacacgcacaactgtggcactcaaaacaaatgaatgaacacaaagatgaaagatataatagccttacccggttagtccatcaacaaaagca 33987801  T
Q  111 agggataagataagaatcagatcatgatattttgctttaagacaagaatattaatttaatttttggcaattcatcatgatggactatgtgtatgt 205  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33987802 agggataagataagaatcagatcatgatattttgctgtaagacaagaatattaatttaatttttggcaattcatcatgatggactatgtgtatgt 33987896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 8988097 - 8988276
Alignment:
Q  23 acacacaactgtggcactcaaaacaaatgaatgaacacaaagatgaaagatataatagcgttagccggttagcccatcaacaaaagcaagggataagata 122  Q
    ||||||||| ||||| |||||||   | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8988097 acacacaacagtggctctcaaaa---acgaatgaacacaaagatgaaagatataatagccttagccggttagcccatcaacaaaagcaagggataagata 8988193  T
Q  123 agaatcagatcatgatattttgctttaagacaagaatattaatttaatttttggcaattcatcatgatggactatgtgtatgt 205  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||    
T  8988194 agaatcagatcatgatattttgccttaagacaagaatatcaattttatttttggcaattcatcatgatggcctatgtgtatgt 8988276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 9026436 - 9026615
Alignment:
Q  23 acacacaactgtggcactcaaaa-caaatgaatgaacacaaagatgaaagatataatagcgttagccggttagcccatcaacaaaagcaagggataagat 121  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||     
T  9026436 acacacaacagtggcactcaaaaacaaatgaatgaacacaaagatgaaagatataatagccttagcaagttagcccatcaacaaaagcaagggataagaa 9026535  T
Q  122 aagaatcagatcatgatattttgctttaagacaagaatattaatttaatttttggcaattcatcatgatggactatgtgt 201  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||    
T  9026536 aagaataagatcatgatattttgctttaagacaagaatatcaatttaatttttggcaattcatcacgatggcctatgtgt 9026615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 9031707 - 9031882
Alignment:
Q  27 acaactgtggcactcaaaa-caaatgaatgaacacaaagatgaaagatataatagcgttagccggttagcccatcaacaaaagcaagggataagataaga 125  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||| ||||    
T  9031707 acaacagtggcactcaaaaacaaatgaatgaacacaaagatgaaagatataatagccttagcaagttagcccatcaacaaaagcaagggataagaaaaga 9031806  T
Q  126 atcagatcatgatattttgctttaagacaagaatattaatttaatttttggcaattcatcatgatggactatgtgt 201  Q
    || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||    
T  9031807 ataagatcatgatattttgctttaagacaagaatatcaatttaatttttggcaattcatcacgatggcctatgtgt 9031882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 9020506 - 9020688
Alignment:
Q  23 acacacaactgtggcactcaaaa-caaatgaatgaacacaaagatgaaagatataatagcgttagccggttagcccatcaacaaaagcaagggataagat 121  Q
    ||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||    
T  9020506 acacacaatagtggcactcaaaaacaaatgaatgaacacaaagatgaaagatataatacccttagccggttagcccatcaacaaaagcaaggaataagat 9020605  T
Q  122 aagaatcagatcatgatattttgctttaagacaagaatattaatttaatttttggcaattcatcatgatggactatgtgtatgt 205  Q
    ||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||| ||| | ||||||||||    
T  9020606 aagaatccgatcatgatattttgctttaagacgagaatatcaatttaatttttggcaattcaccatg-tggccaatgtgtatgt 9020688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 84 - 205
Target Start/End: Original strand, 9023133 - 9023254
Alignment:
Q  84 tagccggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatattttgctttaagacaagaatattaatttaatttttggcaattca 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||    
T  9023133 tagccggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatactttgctttaagtcaagaatatcaatttaatttttggcaattca 9023232  T
Q  184 tcatgatggactatgtgtatgt 205  Q
    || |||||| ||| ||||||||    
T  9023233 tcgtgatggcctaggtgtatgt 9023254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 88 - 205
Target Start/End: Original strand, 8991882 - 8992001
Alignment:
Q  88 cggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatattttgctttaagacaagaatattaatttaatttttg--gcaattcatc 185  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   ||||||||     
T  8991882 cggttagcctatcaacaaaagcaagggataagataagaatcagatcatgatattttgctttaagacaagaatatcaatttaatttttgcttcaattcata 8991981  T
Q  186 atgatggactatgtgtatgt 205  Q
    ||||||| ||||||||||||    
T  8991982 atgatggcctatgtgtatgt 8992001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 87 - 202
Target Start/End: Original strand, 8973044 - 8973161
Alignment:
Q  87 ccggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatattttgctttaagacaagaatattaatttaatttttg--gcaattcat 184  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||   ||||||||    
T  8973044 ccggttagcctatcaacaaaagcaagggataagataagaatcagatcatgatattttgcttcaagacaagaatatcaatttaatttttgcttcaattcat 8973143  T
Q  185 catgatggactatgtgta 202  Q
     ||| ||| |||||||||    
T  8973144 aatggtggcctatgtgta 8973161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 9030166 - 9030246
Alignment:
Q  122 aagaatcagatcatgatattttgctttaagacaagaatattaatttaa-tttttggcaattcatcatgatggactatgtgt 201  Q
    |||||||||||| |||||||| |||||||||||||||||| ||||||| |||||| |||||||||||||||| ||||||||    
T  9030166 aagaatcagatcgtgatatttggctttaagacaagaatatcaatttaattttttgacaattcatcatgatggcctatgtgt 9030246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 8996024 - 8996087
Alignment:
Q  17 taacagacacacaactgtggcactcaaaa-caaatgaatgaacacaaagatgaaagatataata 79  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  8996024 taacagacacacaactgtggcactcaaaaacaaatgaaagaacacaaagatgaaagatataata 8996087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 8975440 - 8975514
Alignment:
Q  131 atcatgatattttgctttaagacaagaatattaatttaatttttggcaattcatcatgatggactatgtgtatgt 205  Q
    |||||||||||||  |||||||| ||||||| ||||||||| |||||||||||||||||||| ||||||||||||    
T  8975440 atcatgatatttttgtttaagactagaatatcaatttaattgttggcaattcatcatgatggcctatgtgtatgt 8975514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 8996098 - 8996184
Alignment:
Q  112 gggataagataagaatcagatcatgatattttgctttaagacaagaatattaatttaatttttggcaattcatcatgatggactatgtgtatgt 205  Q
    ||||||||||| |||||||||||| |||||||||||       ||||||||||||||||||||||||||||| |||||||| |||||| |||||    
T  8996098 gggataagatacgaatcagatcataatattttgctt-------agaatattaatttaatttttggcaattcaccatgatggcctatgtttatgt 8996184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 9016238 - 9016323
Alignment:
Q  120 ataagaatcagatcatgatattttgctttaagacaagaatattaatttaatttttggcaattcatcatgatggactatgtgtatgt 205  Q
    |||||| |||||||||||||||||||| |||||||||||||| ||||||||||||  |||||||| ||  ||| | ||||||||||    
T  9016238 ataagagtcagatcatgatattttgctataagacaagaatatcaatttaatttttttcaattcataatcgtggcccatgtgtatgt 9016323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 8975361 - 8975393
Alignment:
Q  13 attctaacagacacacaactgtggcactcaaaa 45  Q
    ||||||||||||||||||||||||| |||||||    
T  8975361 attctaacagacacacaactgtggctctcaaaa 8975393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 3643110 - 3643164
Alignment:
Q  25 acacaactgtggcactcaaaacaaatgaatgaacacaaagatgaaagatataata 79  Q
    ||||||| |||| ||||||||  ||||||||||| |||||||||| |||||||||    
T  3643110 acacaacagtgggactcaaaaggaatgaatgaacccaaagatgaatgatataata 3643164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University