View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3151_1D_high_8 (Length: 371)
Name: NF3151_1D_high_8
Description: NF3151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_1D_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 15285257 - 15284909
Alignment:
| Q |
1 |
ggagaggagttcattgtaatatcaatggcagagtcacaaatatcagcctcccttgttttactgatgatgaaatcattactgaaaacaaaaagaacaaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15285257 |
ggagaggagttcattgtaatatcaatggcagagtcacaaatatcagcctcccttgttttactgatgatgaaatcattactgaaaacaaaaagaacaaaac |
15285158 |
T |
|
| Q |
101 |
acattgtctggcaggtaaatttcatctttctatattcgagcttgaatttttgaactacttggatttgagcaacaatgacttcaacactatacaattgtcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15285157 |
acattgtctggcaggtaaatttcatctttctatattcgagcttgaatttttgaactacttggatttgagcaacaatgacttcaacactatacaattgtcg |
15285058 |
T |
|
| Q |
201 |
ttggattgtcaaaccatgtcatcagttaacacttctcatgggagtggaaacttttccaatgtttttcatcttgacttgtctcaaaatgagaatcttgtga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15285057 |
ttggattgtcaaaccatgtcatcagttaacacttcttatgggagtggaaacttttccaatgtttttcatcttgacttgtctcaaaatgagaatcttgtga |
15284958 |
T |
|
| Q |
301 |
ttaatgatttgagatggcttcttcgtctctcatcatccttacaatttct |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15284957 |
ttaatgatttgagatggcttcttcgtctctcatcatccttacaatttct |
15284909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 15465626 - 15465278
Alignment:
| Q |
1 |
ggagaggagttcattgtaatatcaatggcagagtcacaaatatcagcctcccttgttttactgatgatgaaatcattactgaaaacaaaaagaacaaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15465626 |
ggagaggagttcattgtaatatcaatggcagagtcacaaatatcagcctcccttgttttactgatgatgaaatcattactgaaaacaaaaagaacaaaac |
15465527 |
T |
|
| Q |
101 |
acattgtctggcaggtaaatttcatctttctatattcgagcttgaatttttgaactacttggatttgagcaacaatgacttcaacactatacaattgtcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15465526 |
acattgtctggcaggtaaatttcatctttctatattcgagcttgaatttttgaactacttggatttgagcaacaatgacttcaacactatacaattgtcg |
15465427 |
T |
|
| Q |
201 |
ttggattgtcaaaccatgtcatcagttaacacttctcatgggagtggaaacttttccaatgtttttcatcttgacttgtctcaaaatgagaatcttgtga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15465426 |
ttggattgtcaaaccatgtcatcagttaacacttcttatgggagtggaaacttttccaatgtttttcatcttgacttgtctcaaaatgagaatcttgtga |
15465327 |
T |
|
| Q |
301 |
ttaatgatttgagatggcttcttcgtctctcatcatccttacaatttct |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15465326 |
ttaatgatttgagatggcttcttcgtctctcatcatccttacaatttct |
15465278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 15303772 - 15303426
Alignment:
| Q |
1 |
ggagaggagttcattgtaatatcaatggcagagtcacaaatatcagcctcccttgttttactgatgatgaaatcattactgaaaacaaaaagaacaaaac |
100 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||| |||||||||| ||||||||||| |||| | || |||||||||||||||| |
|
|
| T |
15303772 |
ggagaggagttcattgtaacataaatggcagagtcacaaatatcagtctcccttgttccactgatgatgacatcaccattgggcacaaaaagaacaaaac |
15303673 |
T |
|
| Q |
101 |
acattgtctggcaggtaaatttcatctttctatattcgagcttgaatttttgaactacttggatttgagcaacaatgacttcaacactatacaattgtcg |
200 |
Q |
| |
|
|||||| || ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15303672 |
acattgcctaacaggtaaatttcacctttctatattcgagcttgaatttttaaactacttggatttgagcaacaatgacttcaacactatacaattgtcg |
15303573 |
T |
|
| Q |
201 |
ttggattgtcaaaccatgtcatcagttaacacttctcatgggagtggaaacttttccaatgtttttcatcttgacttgtctcaaaatgagaatcttgtga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15303572 |
ttggattgtcaaaccatgtcatcagttaacacttctcatgggagtggaaacttttccaatgtttttcatcttgacttgtctcaaaatgagaatcttgtga |
15303473 |
T |
|
| Q |
301 |
ttaatgatttgagatggcttcttcgtctctcatcatccttacaattt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15303472 |
ttaatgatttgagatggcttcttcgtctctcatcatccttacaattt |
15303426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 15484141 - 15483795
Alignment:
| Q |
1 |
ggagaggagttcattgtaatatcaatggcagagtcacaaatatcagcctcccttgttttactgatgatgaaatcattactgaaaacaaaaagaacaaaac |
100 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||| |||||||||| ||||||||||| |||| | || |||||||||||||||| |
|
|
| T |
15484141 |
ggagaggagttcattgtaacataaatggcagagtcacaaatatcagtctcccttgttccactgatgatgacatcaccattgggcacaaaaagaacaaaac |
15484042 |
T |
|
| Q |
101 |
acattgtctggcaggtaaatttcatctttctatattcgagcttgaatttttgaactacttggatttgagcaacaatgacttcaacactatacaattgtcg |
200 |
Q |
| |
|
|||||| || ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15484041 |
acattgcctaacaggtaaatttcacctttctatattcgagcttgaatttttaaactacttggatttgagcaacaatgacttcaacactatacaattgtcg |
15483942 |
T |
|
| Q |
201 |
ttggattgtcaaaccatgtcatcagttaacacttctcatgggagtggaaacttttccaatgtttttcatcttgacttgtctcaaaatgagaatcttgtga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15483941 |
ttggattgtcaaaccatgtcatcagttaacacttctcatgggagtggaaacttttccaatgtttttcatcttgacttgtctcaaaatgagaatcttgtga |
15483842 |
T |
|
| Q |
301 |
ttaatgatttgagatggcttcttcgtctctcatcatccttacaattt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15483841 |
ttaatgatttgagatggcttcttcgtctctcatcatccttacaattt |
15483795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 15314646 - 15314289
Alignment:
| Q |
1 |
ggagaggagttcattgtaatatcaatggcagagtcacaaatatcagcctcccttgttttac---tgatgatgaa---atcattactgaaaaca---aaaa |
91 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||||||| |||| || || |||| ||| |
|
|
| T |
15314646 |
ggagaggagttcattgtaacatgaatggcagagtcacaaatatcagcctcccttgtttcaccgatgatgatgaagacatcactattggcaacatgaaaac |
15314547 |
T |
|
| Q |
92 |
gaacaaaacacattgtctggcaggtaaatttcatctttctatattcgagcttgaatttttgaactacttggatttgagcaacaatgacttcaacactata |
191 |
Q |
| |
|
||| ||| |||||||| ||||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||||||||||| || ||||| | ||| |
|
|
| T |
15314546 |
gaataaaccacattgtttggcaggtaaaattcatctttctttatttgaccttgaatttttgaactacttggatttgagcaacaacgatttcaaatccata |
15314447 |
T |
|
| Q |
192 |
caattgtcgttggattgtcaaaccatgtcatcagttaacacttctcatgggagtggaaacttttccaatgtttttcatcttgacttgtctcaaaatgaga |
291 |
Q |
| |
|
|| ||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15314446 |
cacttgccaatggattgtcaaaaattgtcatcagttaacacttctcatgggagtggaaacttttccaatgtttttcatcttgacttgtctcaaaatgaga |
15314347 |
T |
|
| Q |
292 |
atcttgtgattaatgatttgagatggcttcttcgtctctcatcatccttacaatttct |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15314346 |
atcttgtgattaatgatttgagatggcttcttcgtctctcgtcatccttacaatttct |
15314289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 15495015 - 15494658
Alignment:
| Q |
1 |
ggagaggagttcattgtaatatcaatggcagagtcacaaatatcagcctcccttgttttac---tgatgatgaa---atcattactgaaaaca---aaaa |
91 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||||||| |||| || || |||| ||| |
|
|
| T |
15495015 |
ggagaggagttcattgtaacatgaatggcagagtcacaaatatcagcctcccttgtttcaccgatgatgatgaagacatcactattggcaacatgaaaac |
15494916 |
T |
|
| Q |
92 |
gaacaaaacacattgtctggcaggtaaatttcatctttctatattcgagcttgaatttttgaactacttggatttgagcaacaatgacttcaacactata |
191 |
Q |
| |
|
||| ||| |||||||| ||||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||||||||||| || ||||| | ||| |
|
|
| T |
15494915 |
gaataaaccacattgtttggcaggtaaaattcatctttctttatttgaccttgaatttttgaactacttggatttgagcaacaacgatttcaaatccata |
15494816 |
T |
|
| Q |
192 |
caattgtcgttggattgtcaaaccatgtcatcagttaacacttctcatgggagtggaaacttttccaatgtttttcatcttgacttgtctcaaaatgaga |
291 |
Q |
| |
|
|| ||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15494815 |
cacttgccaatggattgtcaaaaattgtcatcagttaacacttctcatgggagtggaaacttttccaatgtttttcatcttgacttgtctcaaaatgaga |
15494716 |
T |
|
| Q |
292 |
atcttgtgattaatgatttgagatggcttcttcgtctctcatcatccttacaatttct |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15494715 |
atcttgtgattaatgatttgagatggcttcttcgtctctcgtcatccttacaatttct |
15494658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 15447487 - 15447303
Alignment:
| Q |
1 |
ggagaggagttcattgtaatatcaatggcagagtcacaaatatcagcctcccttgttttactgatgatgaaatcattactgaaaacaaaaagaacaaaac |
100 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||| ||||||||||| || |||| || ||||||||||||||||| |
|
|
| T |
15447487 |
ggagaggagttcattgtaacatgaatggtagagtcacaaatatcagtctcccttgtttcactgatgatgacattattattgggaacaaaaagaacaaaac |
15447388 |
T |
|
| Q |
101 |
acattgtctggcaggtaaatttcatctttctatattcgagcttgaatttttgaactacttggatttgagcaacaatgacttcaac |
185 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15447387 |
acattgtctggcaggtaagttgcatctttctatattcgagcttgaatttttgaactacttgaatttgagcaacaatgacttcaac |
15447303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 224 - 349
Target Start/End: Complemental strand, 15447297 - 15447172
Alignment:
| Q |
224 |
agttaacacttctcatgggagtggaaacttttccaatgtttttcatcttgacttgtctcaaaatgagaatcttgtgattaatgatttgagatggcttctt |
323 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15447297 |
agttaacacttcttatgggagtggaaacttttcaaatgttgttcaccttgacttgtctcaaaatgagaatcttgtgattaatgatttgagatggcttctt |
15447198 |
T |
|
| Q |
324 |
cgtctctcatcatccttacaatttct |
349 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
15447197 |
cgtctctcatcatccttacaatttct |
15447172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 246 - 336
Target Start/End: Complemental strand, 18053015 - 18052925
Alignment:
| Q |
246 |
ggaaacttttccaatgtttttcatcttgacttgtctcaaaatgagaatcttgtgattaatgatttgagatggcttcttcgtctctcatcat |
336 |
Q |
| |
|
|||||||||||| ||||| |||||||||| ||||| ||||||||||||||||||| ||||||||| |||||||||||| || ||||||| |
|
|
| T |
18053015 |
ggaaacttttccgatgttgttcatcttgatttgtcaggaaatgagaatcttgtgattgatgatttgaaatggcttcttcgcctatcatcat |
18052925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 18064047 - 18063981
Alignment:
| Q |
1 |
ggagaggagttcattgtaatatcaatggcagagtcacaaatatcagcctcccttgttttactgatga |
67 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||| |||||| ||| ||||||||||| | |||||| |
|
|
| T |
18064047 |
ggagaggagttcaatgtaacatcaatggtagagtaacaaatctcaatctcccttgtttcattgatga |
18063981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University