View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_1D_low_17 (Length: 302)
Name: NF3151_1D_low_17
Description: NF3151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_1D_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 52967534 - 52967250
Alignment:
| Q |
14 |
aagggagagaagaaggttttagactttaatggagtcaaaatgttgatggaaaatatggaattttttggcagctcagtaagtgagaaacttgagaaaaagt |
113 |
Q |
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| T |
52967534 |
aagggagagaagaaggttttagactttaatgaagtcaaaatgtttatggaaaatatggaattttttggcagctcagtaagtgagaaacttgagtaaaagt |
52967435 |
T |
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| Q |
114 |
atagttcaaggaggtttgtgaagtgttttaggagaatgagccaaacttgaggaggtgaagatggcttttgatgacaacaaagatggttttgtttgatgca |
213 |
Q |
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| T |
52967434 |
atagttcaaggaggtttgtgaagtgttttaggagaatgagccaaacttgaggaggtgaagatggcttttgatgacaacaaagatggttttgtttgatgca |
52967335 |
T |
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| Q |
214 |
taggagttgcaaagagttcttgtta-tttttgggattcaaacaaggatcggaatttgagaaatgtcaaaagattatcaagaattt |
297 |
Q |
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| T |
52967334 |
taggagttgcaaagagttcttgctattttttggggttcaaacaaggatcagaatttgagaaatgtcaaaagattatcaagaattt |
52967250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 50 - 290
Target Start/End: Complemental strand, 52971397 - 52971148
Alignment:
| Q |
50 |
aaaatgttgatggaaaatatggaattttttggcagctcagtaagtgagaaacttgagaaaaagtatagttc-aaggaggtttgtgaagtgttttaggaga |
148 |
Q |
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| T |
52971397 |
aaaatggtgatggaaaaaatgggatttttttgcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagaga |
52971298 |
T |
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| Q |
149 |
atgagccaaacttg-aggaggtgaagatggcttttgatg---------acaacaaagatggttttgtttgatgcataggagttgcaaagagttcttgtta |
238 |
Q |
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| T |
52971297 |
atgagcctagtttggaggagttgaagcaagcttttgatgtttttgatgagaacaaagatggttttatt-gatgcaaaggagttgcaaagagttcttgtta |
52971199 |
T |
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| Q |
239 |
tttttgggattcaaacaaggatcggaatttgagaaatgtcaaaagattatca |
290 |
Q |
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| T |
52971198 |
-ttttgggattgaaacaaggatcagaatttgagaactgccaaaagatgatca |
52971148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 297
Target Start/End: Original strand, 2855799 - 2856040
Alignment:
| Q |
65 |
aatatggaattttttggcagctcagtaagtgagaaacttgagaaaaagtatagttc-aaggaggtttgtgaagtgttttaggagaatgagccaaacttg- |
162 |
Q |
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| T |
2855799 |
aatatgggacttttttgcagctcagaaagtgatgaacttgaagaaaaatatagttcgaaggagttttctgaattgtttgatgagaatgagccaagtttgg |
2855898 |
T |
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| Q |
163 |
aggaggtgaagatggcttttgatg---------acaacaaagatggttttgtttgatgcataggagttgcaaagagttcttgttatttttgggattcaaa |
253 |
Q |
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| T |
2855899 |
aggaagtgaagatggcttttgatgtttttgatgagaacaaagatggtttt-attgatgcaatggagttgaaaagagtt-atgtgtattttgggatttaag |
2855996 |
T |
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| Q |
254 |
caaggatcggaatttgagaaatgtcaaaagattatcaagaattt |
297 |
Q |
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| T |
2855997 |
gaaggttcggaagttgagaattgtcagaagatgattaagaattt |
2856040 |
T |
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