View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3151_1D_low_19 (Length: 295)

Name: NF3151_1D_low_19
Description: NF3151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3151_1D_low_19
NF3151_1D_low_19
[»] chr7 (1 HSPs)
chr7 (12-295)||(12008920-12009203)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 295
Target Start/End: Complemental strand, 12009203 - 12008920
Alignment:
Q  12 atgaacaaaatgcgcgtaacaatagcaataaccaacacatgagtcagcataatgcagcttggacaagacctcctatacgacgatataaaggcaaagttga 111  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12009203 atgaacaaaatgcgcgtatcaatagcaataaccaacacacgagtcagcataatgcagcttggacaagacctcctatacgacgatataaaggcaaagttga 12009104  T
Q  112 cgcctctttttcgagatcgcgcggtaaagtgggtatttgcgtgtgtatacaggatgataggccaatttgtactagcaaaaactgagtagatttctcctat 211  Q
    |||||||||||||||||||||| |||||||||||||| | ||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  12009103 cgcctctttttcgagatcgcgcagtaaagtgggtattggtgtgtgtatagaggatgataggccaatttgtgctagcaaaaaccgagtagatttctcctat 12009004  T
Q  212 tcttggtgccgatattggagaatcattaggactcttccatgctatgaagtaggtaagagatttacaacttaataatgtggtatt 295  Q
    ||||| |  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  12009003 tcttgatatcgatattggagaatcattaggactctttcatgctatgaagtaggtaagagatttagaacttaataatgtggtatt 12008920  T

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