View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_1D_low_21 (Length: 292)
Name: NF3151_1D_low_21
Description: NF3151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_1D_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 286
Target Start/End: Original strand, 5687751 - 5688048
Alignment:
| Q |
10 |
ggtgttgtaaataatacatggtcaaattacagagatat--gacccacatcaattcaatttttgctctatttgttaatccttattataattgtgccactga |
107 |
Q |
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| T |
5687751 |
ggtggtgtaaataatacatggtcaaattacagagatatatgacccacatcaattcaatttttgctctatttgttaatccttattataattgtgccactga |
5687850 |
T |
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| Q |
108 |
--------------------aatcaggatctacaagccaaaccattctcaaacttgagtctagattgaacccttatatgtcttggccatggatcatttga |
187 |
Q |
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| T |
5687851 |
tcatgaacaaaagccactgaaatcaggatctacaagccaaac-attctcaaacttgagtctagattgaacccttatatgtcttggccttggatcatttga |
5687949 |
T |
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| Q |
188 |
taataatataggatagtgattggaaaacaaaaaatgccacaattcataccacggtcaccactctaaccgttccaagactcttgaaccaagtaaacaaat |
286 |
Q |
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| T |
5687950 |
taataatataggatagtgattggaaaacaaaaaatgccacaattcataccacggtcaccactctaaccgttccaagactcttgaaccaagtaaacaaat |
5688048 |
T |
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