View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3151_1D_low_22 (Length: 288)

Name: NF3151_1D_low_22
Description: NF3151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3151_1D_low_22
NF3151_1D_low_22
[»] chr3 (4 HSPs)
chr3 (22-241)||(6456323-6456542)
chr3 (22-241)||(6760305-6760524)
chr3 (30-85)||(407026-407083)
chr3 (30-85)||(416859-416916)
[»] chr7 (1 HSPs)
chr7 (22-217)||(39675998-39676193)
[»] chr1 (8 HSPs)
chr1 (152-203)||(4203628-4203679)
chr1 (152-203)||(7276842-7276893)
chr1 (43-93)||(7276768-7276818)
chr1 (42-93)||(4203684-4203735)
chr1 (30-85)||(24346442-24346499)
chr1 (30-85)||(24358714-24358771)
chr1 (201-247)||(4203545-4203593)
chr1 (201-247)||(7276947-7276995)
[»] chr6 (1 HSPs)
chr6 (30-85)||(24183509-24183566)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 6456542 - 6456323
Alignment:
Q  22 ctacctcatccaataatagatatatgtaattacaagccttcacagtaacaacattttagtttgaatcaacaaatttatcaactcttccacctgcacaaga 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6456542 ctacctcatccaataatagatatatgtaattacaagccttcacagtaacaacattttagtttgaatcaacaaatttatcaactcttccacctgcacaaga 6456443  T
Q  122 tgtaacagaggaggtactctcaatacataaaagacctgtataaacacaaggtctaccaaccacaacaccatgaaaaaacacaaattccatgtgacaaaag 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6456442 tgtaacagaggaggtactctcaatacataaaagacctgtataaacacaaggtctaccaaccacaacaccatgaaaaaacacaaattccatgtgacaaaag 6456343  T
Q  222 taactacacgcatgacagaa 241  Q
    ||| |||||||||| |||||    
T  6456342 taaatacacgcatggcagaa 6456323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 6760305 - 6760524
Alignment:
Q  22 ctacctcatccaataatagatatatgtaattacaagccttcacagtaacaacattttagtttgaatcaacaaatttatcaactcttccacctgcacaaga 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6760305 ctacctcatccaataatagatatatgtaattacaagccttcacagtaacaacattttagtttgaatcaacaaatttatcaactcttccacctgcacaaga 6760404  T
Q  122 tgtaacagaggaggtactctcaatacataaaagacctgtataaacacaaggtctaccaaccacaacaccatgaaaaaacacaaattccatgtgacaaaag 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  6760405 tgtaacagaggaggtactctcaatacataaaagacctgtataaacacaaggtctacgaaccacaacaccatgaaaaaacaaaaattccatgtgacaaaag 6760504  T
Q  222 taactacacgcatgacagaa 241  Q
    ||| |||||||||| |||||    
T  6760505 taaatacacgcatggcagaa 6760524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 407083 - 407026
Alignment:
Q  30 tccaataatagatatatgtaattacaagcctt--cacagtaacaacattttagtttga 85  Q
    |||||||||| |||||||||||||||||||||  ||||||||||| |||| |||||||    
T  407083 tccaataatacatatatgtaattacaagccttcacacagtaacaatatttcagtttga 407026  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 416859 - 416916
Alignment:
Q  30 tccaataatagatatatgtaattacaagcctt--cacagtaacaacattttagtttga 85  Q
    |||||||||| |||||||||||||||||||||  ||||||||||| |||| |||||||    
T  416859 tccaataatacatatatgtaattacaagccttcacacagtaacaatatttcagtttga 416916  T

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Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 39676193 - 39675998
Alignment:
Q  22 ctacctcatccaataatagatatatgtaattacaagccttcacagtaacaacattttagtttgaatcaacaaatttatcaactcttccacctgcacaaga 121  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  39676193 ctacctcatccaataatacatatatgtaattacaagacttcacagtaacaacattttagtttgaatcagcaaatttatcaactcttccacatgcacaaga 39676094  T
Q  122 tgtaacagaggaggtactctcaatacataaaagacctgtataaacacaaggtctaccaaccacaacaccatgaaaaaacacaaattccatgtgaca 217  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  39676093 tgtaacagaggaggtactctcaatacataaaagacttgtataaacacaaggtctaccaaccacaacatcatgaaaaaacacaaattccatatgaca 39675998  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 4203679 - 4203628
Alignment:
Q  152 aagacctgtataaacacaaggtctaccaaccacaacaccatgaaaaaacaca 203  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4203679 aagacccgtataaacacaaggtctaccaaccacaacaccatgaaaaaacaca 4203628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 7276842 - 7276893
Alignment:
Q  152 aagacctgtataaacacaaggtctaccaaccacaacaccatgaaaaaacaca 203  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  7276842 aagacccgtataaacacaaggtctatcaaccacaacaccatgaaaaaacaca 7276893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 7276768 - 7276818
Alignment:
Q  43 atatgtaattacaagccttcacagtaacaacattttagtttgaatcaacaa 93  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  7276768 atatgtaattacaagccttcagagtaacaatattttagtttgaatcaacaa 7276818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 4203735 - 4203684
Alignment:
Q  42 tatatgtaattacaagccttcacagtaacaacattttagtttgaatcaacaa 93  Q
    |||||||||||||||||||||| |||||||| |||||| |||||||||||||    
T  4203735 tatatgtaattacaagccttcagagtaacaatattttaatttgaatcaacaa 4203684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 24346442 - 24346499
Alignment:
Q  30 tccaataatagatatatgtaattacaagcctt--cacagtaacaacattttagtttga 85  Q
    |||||||||| |||||||||||||||||||||  ||||||||||| |||| |||||||    
T  24346442 tccaataatacatatatgtaattacaagccttcacacagtaacaatatttcagtttga 24346499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 24358714 - 24358771
Alignment:
Q  30 tccaataatagatatatgtaattacaagcctt--cacagtaacaacattttagtttga 85  Q
    |||||||||| |||||||||||||||||||||  ||||||||||| |||| |||||||    
T  24358714 tccaataatacatatatgtaattacaagccttcacacagtaacaatatttcagtttga 24358771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 4203593 - 4203545
Alignment:
Q  201 acaaattcca--tgtgacaaaagtaactacacgcatgacagaaggaaaa 247  Q
    ||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  4203593 acaaattccagttgtgacaaaagtaaatacacgcatgacagaaggaaaa 4203545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 7276947 - 7276995
Alignment:
Q  201 acaaattcca--tgtgacaaaagtaactacacgcatgacagaaggaaaa 247  Q
    ||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  7276947 acaaattccagttgtgacaaaagtaaatacacgcatgacagaaggaaaa 7276995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 24183566 - 24183509
Alignment:
Q  30 tccaataatagatatatgtaattacaagcctt--cacagtaacaacattttagtttga 85  Q
    |||||||||| |||||||||||||||||||||  ||||||||||| |||| |||||||    
T  24183566 tccaataatacatatatgtaattacaagccttcacacagtaacaatatttcagtttga 24183509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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