View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3151_1D_low_25 (Length: 267)

Name: NF3151_1D_low_25
Description: NF3151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3151_1D_low_25
NF3151_1D_low_25
[»] chr6 (9 HSPs)
chr6 (47-267)||(26629395-26629615)
chr6 (47-267)||(26735371-26735591)
chr6 (34-267)||(26964120-26964347)
chr6 (36-267)||(26650881-26651104)
chr6 (36-267)||(26756849-26757072)
chr6 (125-248)||(27422663-27422784)
chr6 (165-264)||(31291166-31291264)
chr6 (72-236)||(26965930-26966092)
chr6 (183-251)||(27652530-27652598)
[»] scaffold0003 (1 HSPs)
scaffold0003 (125-248)||(64579-64700)
[»] chr4 (2 HSPs)
chr4 (182-264)||(18692628-18692710)
chr4 (224-264)||(18674557-18674597)


Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 47 - 267
Target Start/End: Original strand, 26629395 - 26629615
Alignment:
Q  47 tcttacaaactggtactccgtttctatttgatgtatatcatgatttaatgtttcctttactcttatgacttgtaaatcttttaaaatgaatttcattttt 146  Q
    |||| ||||||| |||||| ||||||||| | |||| ||||||  |||| ||||||||| | |||||| ||||||||| |||||||||||||||||||||    
T  26629395 tcttccaaactgatactccatttctatttaaagtatctcatgaaataatatttcctttattgttatgagttgtaaatcatttaaaatgaatttcattttt 26629494  T
Q  147 cttcttcttattttgaccgtaacatgttagaattttttgttttctgcataatggtttgtatgacaatttcaagaatggatcctctcatgttgaaataaac 246  Q
     || |||| ||||||||||||||||  |||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  26629495 gtttttctcattttgaccgtaacattgtagaattttttgttttctacataatggtttatatgacaatttcaagagtggatcctctcatgttggaataaac 26629594  T
Q  247 atgaggatgttatgtttcaaa 267  Q
    || |||| |||||||||||||    
T  26629595 ataaggaagttatgtttcaaa 26629615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 47 - 267
Target Start/End: Original strand, 26735371 - 26735591
Alignment:
Q  47 tcttacaaactggtactccgtttctatttgatgtatatcatgatttaatgtttcctttactcttatgacttgtaaatcttttaaaatgaatttcattttt 146  Q
    |||| ||||||| |||||| ||||||||| | |||| ||||||  |||| ||||||||| | |||||| ||||||||| |||||||||||||||||||||    
T  26735371 tcttccaaactgatactccatttctatttaaagtatctcatgaaataatatttcctttattgttatgagttgtaaatcatttaaaatgaatttcattttt 26735470  T
Q  147 cttcttcttattttgaccgtaacatgttagaattttttgttttctgcataatggtttgtatgacaatttcaagaatggatcctctcatgttgaaataaac 246  Q
     || |||| ||||||||||||||||  |||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  26735471 gtttttctcattttgaccgtaacattgtagaattttttgttttctacataatggtttatatgacaatttcaagagtggatcctctcatgttggaataaac 26735570  T
Q  247 atgaggatgttatgtttcaaa 267  Q
    || |||| |||||||||||||    
T  26735571 ataaggaagttatgtttcaaa 26735591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 34 - 267
Target Start/End: Original strand, 26964120 - 26964347
Alignment:
Q  34 tttctttttgaagtcttacaaactggtactccgtttctatttgatgtatatcatgatttaatgtttcctttactcttatgacttgtaaatcttttaaaat 133  Q
    ||||||| ||||||||||||| |||||| ||||||||| ||| |||||| || ||| ||||   |||||||| || |||||||| |||||||||||||||    
T  26964120 tttctttgtgaagtcttacaatctggtaatccgtttctctttaatgtatctcgtgaattaacacttcctttattcatatgacttataaatcttttaaaat 26964219  T
Q  134 gaatttcatttttcttcttcttattttgaccgtaacatgttagaattttttgttttctgcataatggtttgtatgacaatttcaagaatggatcctctca 233  Q
    ||||||||||||  ||||  ||  |||||||| ||||||||||||||||||||||| |||||| ||||||||| ||||||||||| | |||||||||||     
T  26964220 gaatttcatttta-ttctcatt--tttgaccgaaacatgttagaattttttgtttt-tgcatagtggtttgtacgacaatttcaaaagtggatcctctc- 26964314  T
Q  234 tgttgaaataaacatgaggatgttatgtttcaaa 267  Q
     |||||||||||||| |||  |||||||||||||    
T  26964315 -gttgaaataaacataaggtagttatgtttcaaa 26964347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 36 - 267
Target Start/End: Original strand, 26650881 - 26651104
Alignment:
Q  36 tctttttgaagtcttacaaactggtactccgtttctatttgatgtatatcatgatttaatgtttcctttactcttatgacttgtaaatcttttaaaatga 135  Q
    ||||| |||||||||||||||||||||||||||||| ||| |||||| || ||| ||||  ||||||||| || ||||||||  |||| |||||||||||    
T  26650881 tctttgtgaagtcttacaaactggtactccgtttctctttaatgtatctcgtgaattaacatttcctttattcatatgacttaaaaatattttaaaatga 26650980  T
Q  136 atttcatttttcttcttcttattttgaccgtaacatgttagaattttttgttttctgcataatggtttgtatgacaatttcaagaatggatcctctcatg 235  Q
    |||||||        |||| |||||||||  ||| ||| |||| |||||| ||| |||||| |||||||| |||||||||||| | ||||||||||| ||    
T  26650981 atttcat--------ttctcattttgaccaaaacgtgtgagaaatttttggtttttgcatagtggtttgtttgacaatttcaaaagtggatcctctcttg 26651072  T
Q  236 ttgaaataaacatgaggatgttatgtttcaaa 267  Q
    ||||||||||||| |||  |||||||||||||    
T  26651073 ttgaaataaacataaggtagttatgtttcaaa 26651104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 36 - 267
Target Start/End: Original strand, 26756849 - 26757072
Alignment:
Q  36 tctttttgaagtcttacaaactggtactccgtttctatttgatgtatatcatgatttaatgtttcctttactcttatgacttgtaaatcttttaaaatga 135  Q
    ||||| |||||||||||||||||||||||||||||| ||| |||||| || ||| ||||  ||||||||| || ||||||||  |||| |||||||||||    
T  26756849 tctttgtgaagtcttacaaactggtactccgtttctctttaatgtatctcgtgaattaacatttcctttattcatatgacttaaaaatattttaaaatga 26756948  T
Q  136 atttcatttttcttcttcttattttgaccgtaacatgttagaattttttgttttctgcataatggtttgtatgacaatttcaagaatggatcctctcatg 235  Q
    |||||||        |||| |||||||||  ||| ||| |||| |||||| ||| |||||| |||||||| |||||||||||| | ||||||||||| ||    
T  26756949 atttcat--------ttctcattttgaccaaaacgtgtgagaaatttttggtttttgcatagtggtttgtttgacaatttcaaaagtggatcctctcttg 26757040  T
Q  236 ttgaaataaacatgaggatgttatgtttcaaa 267  Q
    ||||||||||||| |||  |||||||||||||    
T  26757041 ttgaaataaacataaggtagttatgtttcaaa 26757072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 125 - 248
Target Start/End: Complemental strand, 27422784 - 27422663
Alignment:
Q  125 ttttaaaatgaatttcatttttcttcttcttattttgaccgtaacatgttagaattttttgttttctgcataatggtttgtatgacaatttcaagaatgg 224  Q
    ||||||| |||||||||||||  ||  ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27422784 ttttaaactgaatttcattttattt--tctcattttgaccgtaacatgtcagaattttttgttttctgcataatggtttgtatgacaatttcaagagtgg 27422687  T
Q  225 atcctctcatgttgaaataaacat 248  Q
    || ||||| |||||||||||||||    
T  27422686 attctctcttgttgaaataaacat 27422663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 165 - 264
Target Start/End: Original strand, 31291166 - 31291264
Alignment:
Q  165 gtaacatgttagaattttttgttttctgcataatggtttgtatgacaatttcaagaatggatcctctcatgttgaaataaacatgaggatgttatgtttc 264  Q
    |||||||||||||||||| |||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||| ||||  | ||||||||||    
T  31291166 gtaacatgttagaatttt-tgttttctgcataatggtgtgtattacaatttcaagagtggatcctctcatgttgaaataaaaatgactaagttatgtttc 31291264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 236
Target Start/End: Original strand, 26965930 - 26966092
Alignment:
Q  72 atttgatgtatatcatgatttaatgtttcctttactcttatgacttgtaaatcttttaaaatgaatttcatttttcttcttcttattttgaccgtaacat 171  Q
    |||| |||||| |||||| ||||| |||||||||  | |||||||| || ||  |||||||||| |||  ||||  ||  ||| ||||||| ||||||||    
T  26965930 atttaatgtatctcatgaattaatatttcctttatacatatgacttatacatgctttaaaatgattttggttttattt--tctcattttgagcgtaacat 26966027  T
Q  172 gttagaattttttgttttctgcataatggtttgtatgacaatttcaagaatggatcctctcatgt 236  Q
    ||||  ||||||||||||||||||||| ||||||||||||||||||| | |||||  ||||||||    
T  26966028 gttatgattttttgttttctgcataatcgtttgtatgacaatttcaaaagtggattttctcatgt 26966092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 27652598 - 27652530
Alignment:
Q  183 ttgttttctgcataatggtttgtatgacaatttcaagaatggatcctctcatgttgaaataaacatgag 251  Q
    |||||||||||||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  27652598 ttgttttctgcatagtggtgtgtatgaaaatttcaagagtggatcctctcatgttgaaataaacatgag 27652530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 125 - 248
Target Start/End: Original strand, 64579 - 64700
Alignment:
Q  125 ttttaaaatgaatttcatttttcttcttcttattttgaccgtaacatgttagaattttttgttttctgcataatggtttgtatgacaatttcaagaatgg 224  Q
    ||||||| |||||||||||||  ||  ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  64579 ttttaaactgaatttcattttattt--tctcattttgaccgtaacatgtcagaattttttgttttctgcataatggtttgtatgacaatttcaagagtgg 64676  T
Q  225 atcctctcatgttgaaataaacat 248  Q
    || ||||| |||||||||||||||    
T  64677 attctctcttgttgaaataaacat 64700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 18692710 - 18692628
Alignment:
Q  182 tttgttttctgcataatggtttgtatgacaatttcaagaatggatcctctcatgttgaaataaacatgaggatgttatgtttc 264  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  18692710 tttgttttctgcataatggtgtgtatgacaatttcaagagtggatcctctcatgttgaaataaacatgaggacgttatgtttc 18692628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 18674597 - 18674557
Alignment:
Q  224 gatcctctcatgttgaaataaacatgaggatgttatgtttc 264  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  18674597 gatcctctcatgttgaaataaacatgaggacgttatgtttc 18674557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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