View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3151_1D_low_30 (Length: 256)
Name: NF3151_1D_low_30
Description: NF3151_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3151_1D_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 246
Target Start/End: Complemental strand, 16842973 - 16842734
Alignment:
| Q |
7 |
gtaatgacatcaaccaagccttgtttcttaggcataaaatacaacctccgcacaacaatgctatatgcaatcacatccaacgaatttggtgaagaagaca |
106 |
Q |
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| T |
16842973 |
gtaatgacatcaaccaagccttgtttcttaggcataaaatacaacctccgcacaacaatgctatatgcaatcacatccaacgaatttggtgaagaagaca |
16842874 |
T |
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| Q |
107 |
tcttcaactttagatgtaacatctctgcatctttgaagcgtcccataacactataaatatcgatccttgtacaaacaatgtgcttgttcagcttcttctc |
206 |
Q |
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| T |
16842873 |
tcttcaactttagatgtaacatctctgcatctttgaagcgtcccataacactataaatatcgatccttgtacaaacaatgtgcttgttcagcttcttctc |
16842774 |
T |
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| Q |
207 |
gtcagcatcacttttcatcatctggttatatattccaaca |
246 |
Q |
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| T |
16842773 |
gtcagcatcacttttcatcatctggttatatattccaaca |
16842734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 53 - 246
Target Start/End: Complemental strand, 24209839 - 24209646
Alignment:
| Q |
53 |
tccgcacaacaatgctatatgcaatcacatccaacgaatttggtgaagaagacatcttcaactttagatgtaacatctctgcatctttgaagcgtcccat |
152 |
Q |
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| T |
24209839 |
tccgcacaacaatgctatatgcaatcatatccaacgaatttggtgaagaagacttcttcaactttagatacaacatctctgcatctttgaagcatcccat |
24209740 |
T |
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| Q |
153 |
aacactataaatatcgatccttgtacaaacaatgtgcttgttcagcttcttctcgtcagcatcacttttcatcatctggttatatattccaaca |
246 |
Q |
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| T |
24209739 |
gacactataaatatcgatcattgtacaaacaatgtgcttgttcagcttcttctcgtcagcattacttttcatcatctggttatatattccaaca |
24209646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 24210236 - 24210191
Alignment:
| Q |
10 |
atgacatcaaccaagccttgtttcttaggcataaaatacaacctcc |
55 |
Q |
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| T |
24210236 |
atgacatcaaccaagccttgtttcttagccataaaatacaacctcc |
24210191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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